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Report for CCDS21994.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21994.1 Public Mus musculus 7 Ifitm2 23 108 98 CCDS HistoryNCBI Gene:80876Re-query CCDS DB by CCDS ID:21994.1Re-query CCDS DB by GeneID:80876See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21994.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081649.9 ENSMUSP00000071470.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081649.9Link to Ensembl Protein Viewer:ENSMUSP00000071470.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000081649Re-query CCDS DB by Protein ID:ENSMUSP00000071470
Original member NCBI NM_030694.1 NP_109619.1 Updated not alive Link to Nucleotide Sequence:NM_030694.1Link to Protein Sequence:NP_109619.1Re-query CCDS DB by Nucleotide ID:NM_030694Re-query CCDS DB by Protein ID:NP_109619
Current member NCBI NM_030694.2 NP_109619.1 Accepted alive Link to Nucleotide Sequence:NM_030694.2Link to Protein Sequence:NP_109619.1Re-query CCDS DB by Nucleotide ID:NM_030694Re-query CCDS DB by Protein ID:NP_109619Link to BLAST:NP_109619.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_109619.1 144 Q99J93 144 100% 0 0

Chromosomal Locations for CCDS 21994.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 140954985 140955173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140955670 140955915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (435 nt):
ATGAGCCACAATTCTCAAGCCTTCTTGTCCACCAATGCCGGGCTTCCTCCAAGCTATGAGACAATCAAAG
AGGAGTACGGGGTGACTGAGCTGGGGGAACCCAGCAACTCAGCTGTTGTGAGGACCACCGTGATCAACAT
GCCCAGAGAGGTGTCGGTGCCTGACCATGTGGTCTGGTCCCTGTTCAATACACTCTTCTTCAACGCCTGC
TGCCTGGGCTTCGTTGCCTATGCCTACTCTGTGAAGTCTAGGGACAGGAAGATGGTGGGCGATGTGGTTG
GAGCCCAGGCCTACGCCTCCACTGCCAAGTGCCTGAATATCAGCTCCCTGATCTTCAGCATCCTTATGGT
CATTATCTGCATCATTATTTTCTCTACCACCTCTGTGGTAGTCTTTCAGTCTTTTGCACAAAGAACACCC
CATTCTGGATTCTAG

Translation (144 aa):
MSHNSQAFLSTNAGLPPSYETIKEEYGVTELGEPSNSAVVRTTVINMPREVSVPDHVVWSLFNTLFFNAC
CLGFVAYAYSVKSRDRKMVGDVVGAQAYASTAKCLNISSLIFSILMVIICIIIFSTTSVVVFQSFAQRTP
HSGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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