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Report for CCDS21992.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21992.1 Public Mus musculus 7 Pgghg 23 108 98 CCDS HistoryNCBI Gene:212974Re-query CCDS DB by CCDS ID:21992.1Re-query CCDS DB by GeneID:212974See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21992.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079403.10 ENSMUSP00000078372.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079403.10Link to Ensembl Protein Viewer:ENSMUSP00000078372.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000079403Re-query CCDS DB by Protein ID:ENSMUSP00000078372
Original member Current member NCBI NM_145387.5 NP_663362.2 Accepted alive Link to Nucleotide Sequence:NM_145387.5Link to Protein Sequence:NP_663362.2Re-query CCDS DB by Nucleotide ID:NM_145387Re-query CCDS DB by Protein ID:NP_663362Link to BLAST:NP_663362.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663362.2 690 Q8BP56-1 690 100% 0 0

Chromosomal Locations for CCDS 21992.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 140942310 140942565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140942986 140943196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140943277 140943712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140944645 140944764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140944951 140945082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140945238 140945349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140945455 140945527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140945626 140945762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140945880 140946013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140946107 140946202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140946331 140946428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140946502 140946713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140946789 140946844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2073 nt):
ATGGACGGCTCTGAAGATGACCCGACCATATTCAGTGCCCGTTGTCTGCCCAGTGACCCCAGGCTCTGGG
CCACTGTAACGAACTCATACCTAGGTACACGTGTGTATCATGACACCATCCATATAAACGGTGTGTACAA
TGGAGCTGTCGGGGACACTCACCGGGCCAGTCTGCCCAGCCCCCTCAATGTCCAGCTGGAGGCCCCTGCA
GGGACAGAACAGCTGACAGAGACCTTTACCCTGGACACCAACACAGGTTCCTTCCTCCACACCCTGGAAG
GCCCCAGCTTCCGGGCTTCCCAGCGGATCTATGCTCACCGTGTGTTACCCCATGTCCTGGTCTTCAGTGT
GTCCATTGCACGCTTGACCACAGGGAACAAACCCATCACAGTGCCGTTACGGGCAGACTTCTCCCCCGAA
AGCCCAGACCTGGACCTGCGTGTGGGGCCTGACTTCCAGGGACTCCGGTACCTGCATGGCCACGTACTTA
ACCCTGAGCAGCCTGGAGAGCCACAGCAGGAAGTGCATATGCTATGGATGCCTGTCCCCCCAGCCTTGAC
CCTTGGGGAAGAGGAGAAGGACAGGACCTGGGAGTTTCTGACTGTTGTGGGTAGCAGCCAGGCTGAAGCC
CAGGACTGCTTTGCTGAGGCCCTACAGCTGCAGACCAGGGGTGTTCTGTATACAATCCATGCAGACTCCT
GGGGCCGGCTCTGGGCAGGCTGTGGCCTGGATGTGGCTGGGCCCCTGGCCCTGCGCCAGGCCCTTCGTGG
CTCTCTCTACTACCTGTTCAGTGAGCTTCCCCAGCCTGGCACTCAAGGATTCATCAGCCATGGGCTTAGC
CCCGGAGGACTCTCCAATGGGAGTAAGGAGGAATGCTACTGGGGCCATATCTTCTGGGATCAGGACATCT
GGATGTTCCCAAATATTTTGATGTTCCACCCAGAAGCCGCCAGGGCCATCCTAGAATACCGAGTCCGTAC
GCTGGGAGGAGCCCTGAAGAATGGCCAGAACCTGGGCTACCAGGGAGCCAAGTTTGCTTGGGAGAGTGCA
AGCACTGGCCTGGAGGTCTGCCCTGAGGACATTTATGGGACCCAGGAGATCCATATCAATGGGGCTGTGG
CCTTGGCCTTTCAGCTGTATTACTATTACACTCAGGACTCGAAGCTCTTCCAAGAGGATGGTGGCTGGGA
TGTGGTCAGTTCTGTGGCTGAGTTTTGGTGTAGCCGTGTAGAATGGAGCTCCCAGGACAAGATGTACCAC
CTGAAAGGAGTCATGCCCCCCGATGAGTACCATTCAGGAGTCAACAACTCTGTCTACACCAATGTCCTGG
TCCAGAACAGCCTGCACTTCGCTGCTGCTTTGGCCAAGGACTTGGGTTTGCCTATCCGAAAACAGTGGCT
GGAGGTGGCTGATAGGATCAAGATACCATTTGACTCTGAGCAGAACTTCCACCCTGAGTTTGATGGCTAT
GAGCGTGGAGAAGAGGTGAAGCAGGCAGATGTTGTGCTCCTGGGGTACCCAGTCCCCTTTCCCCTGACAC
CTGACATCCGAAGGAAAAACTTGGAGACTTATGAGGCCGTGACATCCCCCCAGGGCCCTGCTATGACCTG
GAGCATGTTTGCTGTGGGCTGGATGGAACTGAGGGACCCCTCAAGGGCTCAGGTCCACCTGAGCAGGAGT
TTCGCCAATGTCACTGAGCCCTTCAAGGTGTGGACGGAGAATGCAGACGGGTCTGGTGCAGTGAACTTCT
TGACTGGCATGGGGGGCTTCCTGCAGGCAGCACTCTTCGGGTGCACAGGATTCAGGATCACTGAGGCAGG
TGTGACCTTTGACCCCCTGTGTCCAGACCTGGTCTCCAGAGTATCTGTCTCTGGTATCTCCTACCTGGGG
AACAAGATCAACTTCGCCTTTTCCAAGGACTCGGTGACACTTGAGGTCACAGCCCGTGCAGAGCCCTGGG
CACCCCTACTAGAAGCTGAGCTGTGGCCATCGCTGGCTCATCTTCCCCTGACACCAGGACAGAAGGTCTC
CTTTCCCCACTCAGCTGGCCGGATACAAAGGTCATCCCCATAG

Translation (690 aa):
MDGSEDDPTIFSARCLPSDPRLWATVTNSYLGTRVYHDTIHINGVYNGAVGDTHRASLPSPLNVQLEAPA
GTEQLTETFTLDTNTGSFLHTLEGPSFRASQRIYAHRVLPHVLVFSVSIARLTTGNKPITVPLRADFSPE
SPDLDLRVGPDFQGLRYLHGHVLNPEQPGEPQQEVHMLWMPVPPALTLGEEEKDRTWEFLTVVGSSQAEA
QDCFAEALQLQTRGVLYTIHADSWGRLWAGCGLDVAGPLALRQALRGSLYYLFSELPQPGTQGFISHGLS
PGGLSNGSKEECYWGHIFWDQDIWMFPNILMFHPEAARAILEYRVRTLGGALKNGQNLGYQGAKFAWESA
STGLEVCPEDIYGTQEIHINGAVALAFQLYYYYTQDSKLFQEDGGWDVVSSVAEFWCSRVEWSSQDKMYH
LKGVMPPDEYHSGVNNSVYTNVLVQNSLHFAAALAKDLGLPIRKQWLEVADRIKIPFDSEQNFHPEFDGY
ERGEEVKQADVVLLGYPVPFPLTPDIRRKNLETYEAVTSPQGPAMTWSMFAVGWMELRDPSRAQVHLSRS
FANVTEPFKVWTENADGSGAVNFLTGMGGFLQAALFGCTGFRITEAGVTFDPLCPDLVSRVSVSGISYLG
NKINFAFSKDSVTLEVTARAEPWAPLLEAELWPSLAHLPLTPGQKVSFPHSAGRIQRSSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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