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Report for CCDS21902.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21902.1 Public Mus musculus 7 Ate1 23 108 98 CCDS HistoryNCBI Gene:11907Re-query CCDS DB by CCDS ID:21902.1Re-query CCDS DB by GeneID:11907See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21902.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033139.14 ENSMUSP00000033139.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033139.14Link to Ensembl Protein Viewer:ENSMUSP00000033139.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000033139Re-query CCDS DB by Protein ID:ENSMUSP00000033139
Original member NCBI NM_013799.3 NP_038827.2 Updated not alive Link to Nucleotide Sequence:NM_013799.3Link to Protein Sequence:NP_038827.2Re-query CCDS DB by Nucleotide ID:NM_013799Re-query CCDS DB by Protein ID:NP_038827
Current member NCBI NM_013799.4 NP_038827.2 Accepted alive Link to Nucleotide Sequence:NM_013799.4Link to Protein Sequence:NP_038827.2Re-query CCDS DB by Nucleotide ID:NM_013799Re-query CCDS DB by Protein ID:NP_038827Link to BLAST:NP_038827.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038827.2 516 Q9Z2A5-1 516 100% 0 0

Chromosomal Locations for CCDS 21902.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 130394558 130394736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130418448 130418568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130464131 130464230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130467256 130467437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130481683 130481715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130504694 130504822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130507482 130507699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130509007 130509258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130510811 130510914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130513762 130513824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130516105 130516168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130519356 130519461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1551 nt):
ATGGCTTCTTGGAGCGCGCCTTCACCTAGCCTTGTAGAGTATTTTGAGGGCCAGACCTCCTTCCAGTGTG
GCTACTGCAAGAACAAGTTGGGCAGTCGCTCCTATGGCATGTGGGCACATTCCATGACAGTGCAGGATTA
TCAGGATCTTATAGACCGAGGATGGAGAAGAAGTGGGAAATATGTGTACAAACCTGTCATGGATCAAACA
TGCTGTCCTCAGTATACAATAAGGTGTCATCCTTTACAGTTTCAGCCATCAAAATCTCACAAGAAAGTTT
TGAAAAAAATGCTGAAATTTCTGGCTAAAGGAGAGATCTCGAAAGGCAATTGTGAGGATGAGCCCATGGA
TTCTACAGTGGAGGATGCTGTTGACGGTGACTTTGCATTAATTAACAAGCTGGATATAAAGTGTGATCTC
AAAACACTCAGTGACCTCAAAGGAAGCATAGAGAGTGAAGAGAAGGAGAAAGAAAAGAGTATAAAGAAAG
AAGGGTCTAAAGAATTCATTCATCCACAATCTATAGAGGAGAAGTTGGGCTCTGGTGAACCATCACATCC
AATCAAAGTTCATATTGGTCCTAAGCCAGGCAAAGGGGCTGACTTGAGTAAGCCTCCATGTCGGAAAGCA
AGGGAAATGAGGAAAGAAAGGCAAAGATTAAAACGGATGCAGCAGGCCTCAGCTGCAGCCTCGGAGGCTC
AAGGTCAGCCAGTCTGTTTGTTACCAAAGGCTAAATCCAACCAGCCCAAGTCACTGGAAGATTTGATTTT
TCAATCTTTACCAGAAAATGCATCGCACAAGTTAGAGGTGAGGGTGGTAAGATCTTCTCCACCAAGTCCT
CAGTTCAGAGCCACATTTCAGGAGTCTTACCAGGTCTATAAACGCTACCAGATGGTTGTTCACAAGGACC
CGCCTGATAAGCCAACCGTGAGCCAGTTTACAAGATTCCTTTGCAGCTCACCATTGGAGGCAGAGCACCC
TGCTGATGGACCAGAATGTGGTTATGGCTCCTTTCACCAGCAGTACTGGCTCGATGGGAAGATCATTGCT
GTGGGGGTGTTAGACATTCTCCCGTACTGTGTGTCTTCTGTGTATCTCTACTACGATCCTGATTATTCAT
TTCTGTCTTTGGGTGTCTATTCAGCATTAAGAGAAATTGCTTTTACTAGACAACTGCATGAGAAAACATC
GCAACTCAGCTATTATTATATGGGTTTCTACATTCATTCCTGTCCCAAGATGAGATACAAGGGTCAATAT
AGACCTTCTGATTTGCTGTGTCCTGAGACGTATGTCTGGGTGCCCATTGAGCAGTGCCTGCCTTCTCTGG
ACAACTCCAAGTACTGCCGTTTCAACCAGGACCCCGAAGCAGAGGATGAAGGACGCAGTAAGGAACTTGA
CCGACTAAGGGTGTTTCACAGACGATCTGCCATGCCTTACGGTGTTTATAAGAATCACCAAGAAGACCCA
AGTGAGGAGGCTGGTGTGCTGGAGTATGCAAACCTCGTAGGACAGAAGTGCTCGGAGAGGATGCTGCTGT
TCAGACACTGA

Translation (516 aa):
MASWSAPSPSLVEYFEGQTSFQCGYCKNKLGSRSYGMWAHSMTVQDYQDLIDRGWRRSGKYVYKPVMDQT
CCPQYTIRCHPLQFQPSKSHKKVLKKMLKFLAKGEISKGNCEDEPMDSTVEDAVDGDFALINKLDIKCDL
KTLSDLKGSIESEEKEKEKSIKKEGSKEFIHPQSIEEKLGSGEPSHPIKVHIGPKPGKGADLSKPPCRKA
REMRKERQRLKRMQQASAAASEAQGQPVCLLPKAKSNQPKSLEDLIFQSLPENASHKLEVRVVRSSPPSP
QFRATFQESYQVYKRYQMVVHKDPPDKPTVSQFTRFLCSSPLEAEHPADGPECGYGSFHQQYWLDGKIIA
VGVLDILPYCVSSVYLYYDPDYSFLSLGVYSALREIAFTRQLHEKTSQLSYYYMGFYIHSCPKMRYKGQY
RPSDLLCPETYVWVPIEQCLPSLDNSKYCRFNQDPEAEDEGRSKELDRLRVFHRRSAMPYGVYKNHQEDP
SEEAGVLEYANLVGQKCSERMLLFRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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