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Report for CCDS21611.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21611.1 Public Mus musculus 7 Ubqlnl 23 108 98 CCDS HistoryNCBI Gene:244179Re-query CCDS DB by CCDS ID:21611.1Re-query CCDS DB by GeneID:244179See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21611.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059121.4 ENSMUSP00000056365.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059121.4Link to Ensembl Protein Viewer:ENSMUSP00000056365.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000059121Re-query CCDS DB by Protein ID:ENSMUSP00000056365
Original member Current member NCBI NM_198624.3 NP_941026.2 Accepted alive Link to Nucleotide Sequence:NM_198624.3Link to Protein Sequence:NP_941026.2Re-query CCDS DB by Nucleotide ID:NM_198624Re-query CCDS DB by Protein ID:NP_941026Link to BLAST:NP_941026.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_941026.2 610 Q14DL0 610 100% 0 0

Chromosomal Locations for CCDS 21611.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 104148456 104150288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1833 nt):
ATGCCGCGTATTATCTCTCGATCACCTAAGATGCCCCAGAGCAGGTATACAGCAGGTGTGCCTGCAGATG
GGAAGATCTCTCCAGGTGTCATTCGAGTGATTGTGAAGACTCCAGGCAACCAGATCATCTTTACAGTAGC
TGATGACACCTTAGTGAGGCAGTTCAAGGAGATTCTGTCTGCTCACTTCAAATGCCAAATGGAACAACTG
GTACTGGTCTTTATGGGCCGCCTTCTCAAAGACCATGACACATTGAGCCAGAGGGGCATCACAGATGGCC
ACATTATCCATGTGGTCATCAAGTCCAAGCATGGCCCCAGATCCCTGGCTCACTCTTTCCGGAACCTGGT
AACCAACAATCCCTGCCATCAAGACAGGAACCCTAAAGGAAATAGCAGCATGGTGTGCCAATCTGCAGGC
ATGAATGAAACTAAAGTGGAGTCATCTCTTCTCATGGAGCCAGAGGCACCCAAGGTGGGTACTGAAAGCC
CAGAAGTGGGTAGTCTAGAACATATTGCACAGGTGCTGGAGAATCTTTGTGTCCAGAGTCTGCTGTCTAA
TATGGACTTCGTGCATCAGATGCCTCCAGAACAACCATATATGGAAGAACTGATACAGCAGAACCCAGAA
GTTTCCCATCTTCTTGACAATTCTGAGATCCTATGCCAGACTCTGGAGCTGGTCAGGCACCTTGCCATCA
TCCAAGAGATAATGCAGATCCAGCAGCCAGCACAGAACCCTGAGTATCCACCAAACTCACAGCCATTCTT
GGGTTTAGAAACAGTTCCAAATGGGAACAATCACCTGGGCCAGAGTTATGTCAATAACAACGATCATATG
CTCAATGGTGTGCCTGATCTTTTGGAGGGCAACTGTTTTACAGCTCTTCTGGATGAACAAGTACTAGAAC
AAGTCCAGACTCCTTCTCTATCTCAACCATTACCTCAAGAACAATGGGACCAGCTCTCTTCTTCCCAAGT
AATTTATGCAAATTCTTGTGGATTATCATCAATCACCCCAACAAATGCTACTCCAAATCACACCAACAAT
GTTTCCAGGGAAAATCCAGCCATAGTTGCCACCCAGGGCCAAAGCAATGTCTGCGCTGTTCAGCAGCCAG
CTGAGATTCCAGTCTTACCAACCATATCAATCAACCAGAAGCCTCAAGTTGATAAGGATACTACCATCAC
TCTAGGTATCTCTGACCAGTGGTTAGAGGAAGATCTCCAGCAGTCTGATGACCAGACCAGTTCTCAGATC
ACAGGAGGCATGATCCAGTTGCTTAGAAACCACCCACAAATGGCAGCTCAGATGCTGCTGCTCATGAATA
CGTCCCAACTGAATGAGCAGTGGAGGCAGGAAACTCCCACACCCTTGCAGTCATCACAGCTCCATGACTT
GCTTTTAGCCCTAGCCAACCCCAAAACATCACAAGCATTATTACAAATTGAGCATGGTCTGCAGCTATTG
GCTACAGAGGCTCCTGCCCTTTTGCCCTACATTGAACCTTACCTATGGGGTCTAGGTTGGCTTATTCCTT
CCATCTGTAGCTACCCTGATATAGTGCCCTGGACCTGGAATGTGCAAGACATGGCTGAGCCTCAGTGTCC
TGAAAGCTGCCACAAATCTGAAACAGTCCTTCAGAAAGTACAGCCCCCGTCTGGAGACCCTTCCCATTCC
CTACAAGCCCCGGAGGTTCGTTTCAGCAAAGAGATGGAATGTCTCCAGGCCATGGGATTTGTGAATTATA
ATGCCAACCTGCAAGCGCTCATAGCTACTGATGGTGACACTAATGCTGCTATTTATAAGCTCAAGAGTTC
TCAGGGATTCTAA

Translation (610 aa):
MPRIISRSPKMPQSRYTAGVPADGKISPGVIRVIVKTPGNQIIFTVADDTLVRQFKEILSAHFKCQMEQL
VLVFMGRLLKDHDTLSQRGITDGHIIHVVIKSKHGPRSLAHSFRNLVTNNPCHQDRNPKGNSSMVCQSAG
MNETKVESSLLMEPEAPKVGTESPEVGSLEHIAQVLENLCVQSLLSNMDFVHQMPPEQPYMEELIQQNPE
VSHLLDNSEILCQTLELVRHLAIIQEIMQIQQPAQNPEYPPNSQPFLGLETVPNGNNHLGQSYVNNNDHM
LNGVPDLLEGNCFTALLDEQVLEQVQTPSLSQPLPQEQWDQLSSSQVIYANSCGLSSITPTNATPNHTNN
VSRENPAIVATQGQSNVCAVQQPAEIPVLPTISINQKPQVDKDTTITLGISDQWLEEDLQQSDDQTSSQI
TGGMIQLLRNHPQMAAQMLLLMNTSQLNEQWRQETPTPLQSSQLHDLLLALANPKTSQALLQIEHGLQLL
ATEAPALLPYIEPYLWGLGWLIPSICSYPDIVPWTWNVQDMAEPQCPESCHKSETVLQKVQPPSGDPSHS
LQAPEVRFSKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSSQGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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