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Report for CCDS21479.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21479.1 Public Mus musculus 7 Map6 23 108 98 CCDS HistoryNCBI Gene:17760Re-query CCDS DB by CCDS ID:21479.1Re-query CCDS DB by GeneID:17760See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21479.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068973.10 ENSMUSP00000064787.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068973.10Link to Ensembl Protein Viewer:ENSMUSP00000064787.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000068973Re-query CCDS DB by Protein ID:ENSMUSP00000064787
Original member Current member EBI ENSMUST00000207883.1 ENSMUSP00000146585.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000207883.1Link to Ensembl Protein Viewer:ENSMUSP00000146585.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000207883Re-query CCDS DB by Protein ID:ENSMUSP00000146585
Original member Current member NCBI NM_010837.3 NP_034967.2 Accepted alive Link to Nucleotide Sequence:NM_010837.3Link to Protein Sequence:NP_034967.2Re-query CCDS DB by Nucleotide ID:NM_010837Re-query CCDS DB by Protein ID:NP_034967Link to BLAST:NP_034967.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034967.2 906 Q7TSJ2-1 906 100% 0 0

Chromosomal Locations for CCDS 21479.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 99268022 99269313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99315689 99315902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99317472 99317668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99335985 99337002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2721 nt):
ATGGCGTGGCCGTGCATCACAAGGGCCTGCTGCATCGCCCGCTTCTGGAACCAGCTGGACAAGGCGGACA
TTGCGGTGCCGCTGGTTTTCACCAAGTACTCGGAGGCCACCGAACACCCAGGCGCCCCTCCGCAGCCGCC
AGCTCCGCTGCAGCCCGCGTTAGCGCCCCCCTCGCGTGCTGTCGCCATAGAGACGCAGCCAGCCCAGGGA
GAGTCGGATGCAGTTGCCCGGGCAACAGGGCCTGCGCCCGGGCCCAGCGTCGACCGCGAGACTGTAGCCG
CCCCCGGCCGGAGCGGGCTGGGCTTGGGCGCGGCCTCAGCCTCCACTTCCGGCTCAGGCCCCGCGGACTC
GGTGATGCGACAGGACTACCGCGCCTGGAAAGTGCAGCGGCCCGAGCCAAGCTGCCGGCCGCGCAGCGAG
TACCAGCCGTCCGACGCGCCCTTCGAGCGCGAGACCCAGTACCAGAAGGACTTCCGCGCCTGGCCGCTGC
CCCGGCGCGGGGACCATCCCTGGATCCCCAAGCCGGTGCAAATCCCTGCGACTTCGCAGCCTTCCCAACC
TGTTCTCGGGGTGCCCAAGCGTCGGCCTCAGAGCCAAGAGCGCGGGCCCATGCAACTTTCTGCTGATGCC
CGGGACCCGGAGGGTGCTGGAGGAGCCGGGGTGCTGGCGGCAGGAAAGGCGTCCGGTGTAGACCAGCGCG
ACACACGTAGGAAGGCAGGGCCAGCATGGATGGTGACTCGCAACGAAGGGCACGAAGAGAAGCCTCTGCC
CCCAGCCCAATCCCAGACCCAGGAGGGTGGTCCTGCAGCTGGAAAGGCGTCCGGTGCAGATCAGCGTGAC
ACACGCAGGAAGGCAGGGCCAGCATGGATGGTGACTCGCAGCGAAGGGCACGAAGAGAAGCCTCTGCCCC
CAGCCCAATCCCAGACCCAGGAGGGTGGTCCTGCAGCTGGAAAGGCGTCCGGTGCAGATCAGCGTGACAC
ACGCAGGAAGGCTGGACCCGCGTGGATGGTGACTCGCACGGAAGGGCACGAGGAGACGCCGCTGCCACCC
GCCCAGTCTCAGACCCAGGAGGGCGGCCCCGCAGCTGGAAAGGCATCTGGTGCAGACGAGCGCGACACGA
GGAGGAAGGCGGGGCCGGCCTGGATGGTGCGTCGCTCGGAGGGGCACGAACAGACACCCGCTGCCCATGC
CCAAGGCACAGGGCCTGAAGGAGGCAAGGGGCGCGCGGTGGCAGATGCCCTCAACAGGCAAATCCGGGAG
GAGGTGGCGAGTACAGTAAGCAGCTCTTACAGGAATGAATTCAGAGCATGGACTGACATCAAGCCTGTGA
AACCCATCAAAGCCAAGCCCCAGTACAAGCCCCCAGATGACAAGATGGTTCATGAGACCAGCTACAGCGC
CCAGTTCAAAGGGGAGGCCAATAAGCCCAGTGCAGCGGACAACAAGGCCATGGATCGCAGAAGAATACGG
AGCCTCTACAGTGAGCCTTTCAAGGAATGCCCGAAGGTAGAGAAACCTAGTGTTCAGAGTTCCAAACCAA
AAAAGACCTCAACGAGCCATAAACCCCCAAGGAAGGCCAAAGACAAGCAGGTGGTGTCGGGCCAGGCTGC
CAAGAAAAAGACCACAGAGGGCCCCAGTGCTACCAAACCCGACGACAAGGAGCAAAGCAAAGAGATGAAC
AATAAACTGGCTGAGGCGAAAGAGAGCCGGGTCAAACCCACCAGTGATGCATCTAAGAACCGAGGTCCTG
TAACCAAAGAGCCACACAAGGATCAAGGCTCTGTGGCCCCAGGTCTTCCAAAAGGCCAAGAGCCTTTGAA
GGATCAAGGCCCTGTGGTGCCAGGACTGCCAAAAGATCAAGTTCCTGTAGTCCCAGGGTCCTTAAAGGGT
CAGAGCCCTACAGCCCCGGGCCCTACAAAGGATCAAGGTGCTGTGCTCTTAGGGCCCGTGAAGGATCTAG
GTCCAGTGGCCCCAGCACCCATCAAGGTTCAGGACCACATAGCATCTGAGCTTTTAAAGAATAAAGATTC
TGTCCCCTTAGCACCAGCCAAAGCCCAAAGCCCTCTGTTGCCAGAGCCTCTGAAGAATCAGAGTCCTGTG
GTTCCAGCAAGCACTAAGGATCAAAGCTTCCCAACACCAGCACCTCGGAAGGACCCAGGCCCTGTGATCC
CCGAGCCCGAGAAGGATCGAGCTCCCACGGTCCCAGAGCGTAGGAAGGACCAGCATGTCTCCATCATGGC
CTCTTTGAAGAACGAAGCTCCTATGGTCCCCGAGTCTGTGAAGAATCAAGGCTTAGCAGGCCCAGAGCTA
GTTAAAGATACAGGTACAGATACAACAGCCCCCAGGTATCTGAAGGGACATGATTCTGTGTTTGTAGCAC
CTGTGAAGAACCAAGGTCCAGTGATCCCTGAGCCAGTGAAGAGCCAAGACCCCATTATCCCAGCACTAGC
CAAGGACCAAGGTCCCATGCTCCCAGAGCCTCCAAAGAATCAAAGCCCTGTGGTTCTTGGGCCTATAAAG
AATCAAGACCCTATAATCCCAGTACCTTTGAAGGGTCAGGATCCCCTGGTGCCAGCCCCAACAAAGGACC
AAGGTCCTACAGCCCCTGACCCTCTGAAGACTCAAGGTCCCAAAGGCACTCAACTGCCCACAGTCTCACC
TTCACCCCCAGTCATGATCCCAACAGTTCCCCATACGGAATATATTGAGGGATCCCCTTGA

Translation (906 aa):
MAWPCITRACCIARFWNQLDKADIAVPLVFTKYSEATEHPGAPPQPPAPLQPALAPPSRAVAIETQPAQG
ESDAVARATGPAPGPSVDRETVAAPGRSGLGLGAASASTSGSGPADSVMRQDYRAWKVQRPEPSCRPRSE
YQPSDAPFERETQYQKDFRAWPLPRRGDHPWIPKPVQIPATSQPSQPVLGVPKRRPQSQERGPMQLSADA
RDPEGAGGAGVLAAGKASGVDQRDTRRKAGPAWMVTRNEGHEEKPLPPAQSQTQEGGPAAGKASGADQRD
TRRKAGPAWMVTRSEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRKAGPAWMVTRTEGHEETPLPP
AQSQTQEGGPAAGKASGADERDTRRKAGPAWMVRRSEGHEQTPAAHAQGTGPEGGKGRAVADALNRQIRE
EVASTVSSSYRNEFRAWTDIKPVKPIKAKPQYKPPDDKMVHETSYSAQFKGEANKPSAADNKAMDRRRIR
SLYSEPFKECPKVEKPSVQSSKPKKTSTSHKPPRKAKDKQVVSGQAAKKKTTEGPSATKPDDKEQSKEMN
NKLAEAKESRVKPTSDASKNRGPVTKEPHKDQGSVAPGLPKGQEPLKDQGPVVPGLPKDQVPVVPGSLKG
QSPTAPGPTKDQGAVLLGPVKDLGPVAPAPIKVQDHIASELLKNKDSVPLAPAKAQSPLLPEPLKNQSPV
VPASTKDQSFPTPAPRKDPGPVIPEPEKDRAPTVPERRKDQHVSIMASLKNEAPMVPESVKNQGLAGPEL
VKDTGTDTTAPRYLKGHDSVFVAPVKNQGPVIPEPVKSQDPIIPALAKDQGPMLPEPPKNQSPVVLGPIK
NQDPIIPVPLKGQDPLVPAPTKDQGPTAPDPLKTQGPKGTQLPTVSPSPPVMIPTVPHTEYIEGSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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