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Report for CCDS21371.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21371.1 Public Mus musculus 7 Ntrk3 23 108 98 CCDS HistoryNCBI Gene:18213Re-query CCDS DB by CCDS ID:21371.1Re-query CCDS DB by GeneID:18213See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21371.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039431.13 ENSMUSP00000037909.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039431.13Link to Ensembl Protein Viewer:ENSMUSP00000037909.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000039431Re-query CCDS DB by Protein ID:ENSMUSP00000037909
Original member Current member NCBI NM_008746.5 NP_032772.3 Accepted alive Link to Nucleotide Sequence:NM_008746.5Link to Protein Sequence:NP_032772.3Re-query CCDS DB by Nucleotide ID:NM_008746Re-query CCDS DB by Protein ID:NP_032772Link to BLAST:NP_032772.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032772.3 825 Q6VNS1-1 825 100% 0 0

Chromosomal Locations for CCDS 21371.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 78192559 78192744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 78198793 78198951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 78247155 78247398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 78250701 78250873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 78260284 78260414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 78356027 78356215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 78450887 78450989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 78451891 78451955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 78453323 78453346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 78460281 78460577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 78461045 78461186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 78461586 78461728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 78462785 78462942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 78477864 78477932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 78516729 78516800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 78517419 78517493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 78577536 78577783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2478 nt):
ATGGATGTCTCTCTTTGCCCAGCCAAGTGTAGTTTCTGGCGGATTTTCTTGCTGGGAAGCGTCTGGCTGG
ACTATGTGGGCTCCGTGCTGGCTTGCCCTGCAAATTGTGTCTGCAGCAAGACTGAGATCAATTGCCGGCG
GCCGGACGATGGGAACCTCTTCCCTCTCCTGGAAGGGCAGGATTCAGGGAACAGCAATGGGAACGCCAGC
ATCAACATTACGGACATCTCAAGGAATATCACTTCCATACACATAGAGAACTGGCGAGGCCTGCACACAC
TCAATGCTGTGGACATGGAGCTCTACACGGGACTCCAGAAGCTGACCATCAAGAATTCTGGACTCCGGAA
CATCCAGCCCAGAGCCTTCGCCAAGAACCCCCACTTGCGTTATATAAACTTGTCAAGTAACCGGCTCACC
ACACTCTCCTGGCAGCTCTTCCAGACGCTGAGCCTTCGGGAATTGAGACTGGAGCAGAACTTCTTCAACT
GCAGCTGTGACATCCGCTGGATGCAGCTGTGGCAGGAACAGGGGGAGGCGCGGCTGGACAGCCAGAGCCT
TTACTGCATCAGTGCTGATGGCTCCCAACTCCCCCTCTTCCGCATGAACATCAGTCAGTGTGATCTCCCA
GAGATCAGTGTGAGCCACGTCAACCTGACTGTCCGAGAAGGAGACAATGCCGTGATCACTTGCAATGGCT
CTGGCTCTCCTTTGCCTGATGTGGACTGGATAGTCACTGGGCTGCAGTCCATCAACACCCACCAGACCAA
TCTGAACTGGACCAATGTACATGCCATCAACTTGACCCTGGTGAACGTGACGAGCGAGGACAATGGCTTC
ACCCTGACGTGCATTGCAGAGAACGTGGTGGGCATGAGCAATGCCAGTGTTGCTCTCACTGTCTACTACC
CTCCACGTGTGGTGAGCCTGGTGGAGCCTGAGGTACGCCTGGAACATTGCATTGAGTTTGTGGTGCGTGG
CAACCCGACACCCACGCTCCACTGGCTGTACAATGGACAGCCATTGAGGGAGTCCAAGATCATTCACATG
GACTACTACCAGGAGGGGGAGGTCTCAGAGGGCTGCCTGCTCTTCAACAAGCCCACCCACTACAACAATG
GCAACTACACCCTCATTGCTAAGAATGCCCTGGGCACGGCCAACCAGACCATCAACGGCCACTTCCTGAA
GGAGCCCTTTCCAGAGAGCACAGATTTCTTTGACTTTGAGTCTGATGCGAGCCCTACACCTCCTATCACT
GTGACCCACAAACCAGAGGAAGACACTTTTGGGGTGTCCATAGCAGTCGGACTTGCTGCCTTTGCCTGCG
TCCTTCTGGTGGTTCTCTTTATCATGATCAACAAGTATGGTCGCCGGTCCAAATTTGGAATGAAGGGTCC
TGTGGCTGTTATCAGTGGAGAGGAGGACTCAGCCAGCCCACTGCATCACATCAACCATGGCATCACTACA
CCATCATCGTTGGATGCTGGGCCTGACACAGTGGTCATTGGCATGACCCGCATCCCAGTCATTGAGAACC
CCCAGTACTTCCGTCAGGGTCACAATTGCCACAAGCCAGACACATATGTTCAGCACATCAAGAGGAGAGA
CATCGTGTTGAAGAGAGAATTGGGTGAGGGAGCCTTTGGGAAGGTCTTCCTGGCTGAGTGCTACAATCTA
AGCCCCACCAAAGACAAGATGCTAGTGGCAGTGAAGGCCCTGAAGGATCCCACCTTGGCTGCCAGGAAGG
ATTTCCAGAGGGAGGCTGAGCTGCTCACGAACCTGCAGCATGAGCATATTGTCAAGTTCTATGGGGTGTG
TGGTGATGGTGACCCACTCATCATGGTCTTTGAATACATGAAGCATGGAGACCTTAACAAGTTCCTCAGG
GCCCATGGGCCAGATGCCATGATCCTCGTGGATGGACAGCCACGTCAGGCCAAGGGGGAGCTAGGGCTCT
CTCAGATGCTCCACATCGCCAGTCAGATAGCCTCGGGCATGGTGTACCTGGCTTCCCAGCACTTTGTACA
CCGGGACCTGGCCACGAGGAACTGCCTGGTTGGAGCCAATCTACTAGTGAAGATTGGAGATTTTGGCATG
TCCAGGGACGTCTACAGTACTGATTACTACAGGGTGGGAGGACACACCATGCTCCCCATCCGCTGGATGC
CCCCTGAAAGCATAATGTACCGGAAGTTCACCACAGAGAGTGATGTCTGGAGCTTCGGGGTTATTCTTTG
GGAGATCTTTACCTATGGGAAGCAACCATGGTTCCAGCTTTCCAACACGGAGGTCATTGAATGCATCACC
CAAGGCCGTGTCTTGGAGAGACCCAGAGTCTGCCCTAAAGAAGTGTATGATGTCATGCTGGGGTGCTGGC
AGAGGGAACCACAGCAGCGGCTGAATATTAAGGAGATCTACAAAATCCTCCATGCTTTGGGGAAGGCCAC
CCCGATCTACCTGGACATTCTTGGCTAG

Translation (825 aa):
MDVSLCPAKCSFWRIFLLGSVWLDYVGSVLACPANCVCSKTEINCRRPDDGNLFPLLEGQDSGNSNGNAS
INITDISRNITSIHIENWRGLHTLNAVDMELYTGLQKLTIKNSGLRNIQPRAFAKNPHLRYINLSSNRLT
TLSWQLFQTLSLRELRLEQNFFNCSCDIRWMQLWQEQGEARLDSQSLYCISADGSQLPLFRMNISQCDLP
EISVSHVNLTVREGDNAVITCNGSGSPLPDVDWIVTGLQSINTHQTNLNWTNVHAINLTLVNVTSEDNGF
TLTCIAENVVGMSNASVALTVYYPPRVVSLVEPEVRLEHCIEFVVRGNPTPTLHWLYNGQPLRESKIIHM
DYYQEGEVSEGCLLFNKPTHYNNGNYTLIAKNALGTANQTINGHFLKEPFPESTDFFDFESDASPTPPIT
VTHKPEEDTFGVSIAVGLAAFACVLLVVLFIMINKYGRRSKFGMKGPVAVISGEEDSASPLHHINHGITT
PSSLDAGPDTVVIGMTRIPVIENPQYFRQGHNCHKPDTYVQHIKRRDIVLKRELGEGAFGKVFLAECYNL
SPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLR
AHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIGDFGM
SRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSNTEVIECIT
QGRVLERPRVCPKEVYDVMLGCWQREPQQRLNIKEIYKILHALGKATPIYLDILG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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