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Report for CCDS2134.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2134.1 Public Homo sapiens 2 TFCP2L1 24 110 108 CCDS HistoryNCBI Gene:29842Re-query CCDS DB by CCDS ID:2134.1Re-query CCDS DB by GeneID:29842See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2134.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263707.6 ENSP00000263707.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000263707.6Link to Ensembl Protein Viewer:ENSP00000263707.5Re-query CCDS DB by Nucleotide ID:ENST00000263707Re-query CCDS DB by Protein ID:ENSP00000263707
Original member Current member NCBI NM_014553.3 NP_055368.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014553.3Link to Protein Sequence:NP_055368.1Re-query CCDS DB by Nucleotide ID:NM_014553Re-query CCDS DB by Protein ID:NP_055368Link to BLAST:NP_055368.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055368.1 479 Q9NZI6 479 100% 0 0

Chromosomal Locations for CCDS 2134.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 121224341 121224387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121225562 121225613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121231826 121231968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121234091 121234194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121235221 121235311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121237623 121237716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121237802 121237850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121239558 121239649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121242359 121242469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121246818 121246970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121248164 121248270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121248982 121249087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121249571 121249647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121281120 121281271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121285048 121285109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1440 nt):
ATGCTCTTCTGGCACACGCAGCCCGAGCACTACAACCAGCACAACTCCGGCAGCTACCTGCGTGATGTGC
TCGCTCTGCCCATCTTCAAGCAGGAGGAACCCCAGCTGTCCCCCGAGAACGAGGCCCGCCTGCCACCCCT
GCAATATGTGTTGTGTGCTGCCACGTCCCCAGCCGTGAAGCTGCATGAAGAGACGCTGACCTACCTCAAC
CAAGGTCAGTCTTATGAAATCCGACTACTGGAGAATCGGAAGCTGGGAGACTTTCAAGATCTGAACACAA
AATATGTCAAGAGCATCATCCGTGTGGTCTTCCATGACCGCCGGCTGCAGTATACGGAGCACCAGCAGCT
GGAGGGCTGGCGGTGGAGTCGGCCAGGGGACCGGATCCTGGACATCGATATTCCACTGTCTGTTGGTATC
TTGGACCCCAGGGCCAGCCCGACCCAGCTGAATGCAGTCGAGTTTTTGTGGGACCCTGCGAAGAGAGCTT
CTGCATTCATTCAGGTACACTGCATCAGCACAGAATTCACCCCCAGGAAGCACGGGGGCGAGAAGGGAGT
GCCCTTTCGAGTCCAGATTGACACGTTTAAGCAGAACGAGAATGGGGAGTACACGGAGCACCTGCACTCA
GCCAGCTGCCAGATCAAGGTGTTCAAGCCGAAGGGAGCCGATCGGAAACAGAAGACTGACCGGGAGAAGA
TGGAGAAAAGAACTGCCCAAGAGAAGGAGAAATACCAGCCGTCCTATGAAACCACCATCCTCACAGAGTG
CTCTCCATGGCCCGACGTGGCCTACCAGGTGAACAGCGCCCCGTCCCCAAGCTACAATGGTTCTCCAAAC
AGCTTTGGCCTCGGCGAAGGCAACGCCTCTCCGACCCACCCGGTGGAGGCCCTGCCCGTGGGCAGTGACC
ACCTGCTCCCATCAGCTTCGATCCAGGATGCCCAGCAGTGGCTTCACCGCAACAGGTTCTCGCAGTTCTG
CCGGCTCTTTGCCAGCTTCTCAGGTGCTGACTTGCTGAAGATGTCCCGAGATGATTTGGTCCAGATCTGT
GGTCCCGCAGATGGGATCCGGCTCTTCAACGCCATCAAAGGCCGGAATGTGAGGCCAAAGATGACCATTT
ATGTCTGTCAGGAGCTGGAGCAGAATCGAGTGCCCCTGCAGCAGAAGCGGGACGGCAGTGGAGACAGCAA
CCTGTCTGTGTACCACGCCATCTTCCTGGAAGAGCTGACCACCTTGGAGCTGATTGAGAAGATCGCCAAC
CTGTACAGCATCTCCCCCCAGCACATCCACCGAGTCTACCGGCAGGGCCCCACGGGCATCCATGTGGTGG
TGAGCAACGAGATGGTGCAGAACTTCCAAGATGAATCCTGTTTTGTCCTCAGCACAATTAAAGCTGAGAG
CAATGATGGCTACCACATCATCCTGAAATGTGGACTCTGA

Translation (479 aa):
MLFWHTQPEHYNQHNSGSYLRDVLALPIFKQEEPQLSPENEARLPPLQYVLCAATSPAVKLHEETLTYLN
QGQSYEIRLLENRKLGDFQDLNTKYVKSIIRVVFHDRRLQYTEHQQLEGWRWSRPGDRILDIDIPLSVGI
LDPRASPTQLNAVEFLWDPAKRASAFIQVHCISTEFTPRKHGGEKGVPFRVQIDTFKQNENGEYTEHLHS
ASCQIKVFKPKGADRKQKTDREKMEKRTAQEKEKYQPSYETTILTECSPWPDVAYQVNSAPSPSYNGSPN
SFGLGEGNASPTHPVEALPVGSDHLLPSASIQDAQQWLHRNRFSQFCRLFASFSGADLLKMSRDDLVQIC
GPADGIRLFNAIKGRNVRPKMTIYVCQELEQNRVPLQQKRDGSGDSNLSVYHAIFLEELTTLELIEKIAN
LYSISPQHIHRVYRQGPTGIHVVVSNEMVQNFQDESCFVLSTIKAESNDGYHIILKCGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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