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Report for CCDS21338.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21338.1 Public Mus musculus 7 Tjp1 23 108 98 CCDS HistoryNCBI Gene:21872Re-query CCDS DB by CCDS ID:21338.1Re-query CCDS DB by GeneID:21872See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21338.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102592.9 ENSMUSP00000099652.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102592.9Link to Ensembl Protein Viewer:ENSMUSP00000099652.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102592Re-query CCDS DB by Protein ID:ENSMUSP00000099652
Original member NCBI NM_009386.2 NP_033412.2 Updated not alive Link to Nucleotide Sequence:NM_009386.2Link to Protein Sequence:NP_033412.2Re-query CCDS DB by Nucleotide ID:NM_009386Re-query CCDS DB by Protein ID:NP_033412
Current member NCBI NM_009386.3 NP_033412.2 Accepted alive Link to Nucleotide Sequence:NM_009386.3Link to Protein Sequence:NP_033412.2Re-query CCDS DB by Nucleotide ID:NM_009386Re-query CCDS DB by Protein ID:NP_033412Link to BLAST:NP_033412.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033412.2 1745 P39447 1745 100% 0 0

Chromosomal Locations for CCDS 21338.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 65297573 65297667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 65299730 65299813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 65301066 65301283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 65302744 65303218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 65306370 65306536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 65311004 65311231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 65312334 65312431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 65312555 65313424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 65314093 65314332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 65314659 65315009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 65317987 65318087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 65318364 65318574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 65319250 65319332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 65322280 65322375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 65322494 65322678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 65322955 65323174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 65323989 65324097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 65326262 65326412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 65328924 65329029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 65329626 65329765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 65336032 65336179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 65336497 65336665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 65337043 65337146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 65340150 65340426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 65342617 65342719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 65343615 65343739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 65354832 65354888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 65370810 65370836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5238 nt):
ATGTCCGCCAGGGCCGCGGCCGCTAAGAGCACAGCAATGGAGGAAACAGCTATATGGGAACAGCACACAG
TGACGCTTCACAGGGCTCCTGGGTTTGGATTTGGAATTGCAATCTCTGGTGGAAGAGATAATCCTCATTT
TCAGAGTGGGGAAACCTCCATAGTGATTTCTGATGTGTTAAAAGGAGGGCCAGCTGAAGGACAGCTACAG
GAAAATGACCGAGTTGCAATGGTTAACGGAGTTTCAATGGATAACGTTGAACATGCTTTTGCTGTTCAGC
AGCTAAGGAAGAGTGGGAAAAACGCAAAAATTACTATCCGAAGGAAGAAGAAAGTTCAGATCCCTGTAAG
TCACCCAGATCCTGAGCCGGTGTCTGATAATGAAGACGATAGTTATGACGAAGAAGTGCATGACCCAAGA
GCTGGCCGCGGTGCTTTAGCGAACAGAAGGAGCGAGAAGAGCTGGGCAAGGGATAGGAGTGCAAGCAGGG
AGAGGAGCCTGTCCCCTCGCTCGGACAGGCGGTCCGTGGCCTCCAGTCAGCCCGCAAAGCCCACCAAGGT
CACACTGGTGAAGTCTCGGAAAAATGAAGAATATGGTCTTCGATTGGCCAGCCATATATTTGTAAAGGAA
ATTTCACAAGATAGTTTGGCAGCAAGAGATGGTAACATTCAAGAAGGGGATGTTGTCTTGAAGATAAATG
GTACTGTGACAGAAAATATGTCATTGACAGATGCAAAAACACTGATAGAAAGGTCTAAAGGCAAGTTAAA
AATGGTAGTGCAAAGAGATGAGCGGGCTACCTTACTGAACGTCCCTGACCTTTCGGATAGTATCCATTCT
GCTAATGCCTCGGAAAGAGATGACATTTCAGAAATTCAGTCACTAGCATCAGACCATTCAGGTCGCTCGC
ATGACAGGCCACCCCGCCGCAGCCAGTCACGATCTCCTGACCAACGTTCAGAGCCCTCCGATCATTCCAC
GCAGTCTCCACAGCAGCCCAGCAATGGCAGTCTCCGGAGCAGAGAGGAAGAGCGAATGTCTAAACCTGGG
GCCATCTCAACTCCTGTAAAACATGTAGACGATCATCCACCCAAAGCAGTGGAAGAAGTTACAGTTGAGA
AAAATGAGAAGCAGACGCCCACTCTTCCAGAACCGAAACCTGTGTATGCTCAAGTTGGACAACCAGATGT
GGATTTACCCGTCAGCCCTTCTGATGGTGCTCTGCCTAATTCAGCTCATGAAGACGGGATACTTAGGCCC
AGCATGAAACTGGTAAAATTCAGAAAAGGAGATAGTGTGGGTTTGCGACTAGCTGGTGGAAATGATGTCG
GAATATTTGTAGCTGGCGTTCTAGAAGATAGCCCTGCAGCCAAAGAAGGCTTAGAGGAAGGTGATCAAAT
TCTCAGGGTGAACAATGTAGATTTCACAAATATCATAAGGGAAGAGGCCGTCCTTTTCCTCCTTGACCTC
CCTAAAGGTGAAGAAGTGACCATACTGGCTCAGAAGAAGAAGGACGTTTATCGCCGCATTGTAGAATCAG
ATGTAGGAGATTCATTCTATATTAGAACGCATTTTGAATATGAAAAAGAATCTCCTTACGGACTTAGTTT
TAACAAAGGAGAGGTGTTCCGGGTCGTGGATACTTTATACAATGGAAAGCTGGGCTCTTGGCTTGCCATT
CGAATTGGCAAAAATCATAAGGAGGTAGAACGAGGCATCATCCCTAATAAGAACAGAGCTGAACAGTTAG
CCAGTGTACAGTACACACTTCCAAAGACAGCGGGTGGTGATCGGGCAGACTTCTGGAGGTTTCGAGGTCT
TCGCAGCTCCAAGAGAAATCTTCGAAAAAGCAGAGAGGACTTGTCAGCTCAGCCAGTTCAAACTAAGTTC
CCAGCTTATGAAAGGGTTGTTCTTCGAGAAGCTGGATTCCTAAGACCTGTAACCATCTTTGGACCAATAG
CTGATGTTGCCAGAGAAAAGTTGGCAAGAGAGGAGCCAGATATCTATCAGATTGCAAAAAGTGAACCACG
AGATGCTGGGACTGACCATCGTAGCTCTGGCATCATTCGCCTTCATACAATAAAGCAAATCATAGATCAG
GATAAACATGCTTTATTAGATGTAACGCCAAATGCGGTTGATCGTCTTAATTATGCGCAGTGGTATCCAA
TTGTTGTGTTCCTTAACCCTGACTCTAAGCAAGGTGTAAAAACAATGAGGATGAGGTTGTGTCCGGAGTC
TCGGAAAAGCGCCAGGAAGCTATATGAACGCTCTCATAAGCTTCGTAAGAACAATCACCATCTCTTCACA
ACTACAATTAACTTAAACTCAATGAATGATGGTTGGTACGGTGCCCTGAAAGAAGCGATTCAGCAGCAAC
AGAACCAGCTGGTGTGGGTCTCTGAGGGGAAGGCGGATGGTGCTACAAGTGATGACCTTGATTTGCATGA
CGATCGTCTGTCCTACCTGTCAGCCCCAGGTAGTGAGTACTCAATGTATAGCACGGACAGTAGACACACT
TCTGACTATGAAGACACAGATACAGAAGGCGGGGCCTACACTGATCAAGAACTAGATGAAACTCTTAATG
ATGAGGTGGGGACTCCCCCGGAGTCTGCCATTACACGGTCCTCTGAGCCTGTAAGAGAGGATTCCTCTGG
AATGCATCATGAAAACCAGACATACCCTCCTTACTCACCACAAGCGCAGCCACAAGCTATTCATAGAATA
GACTCCCCTGGACTTAAGCCAGCCTCTCAACAGAAAGCAGAAGCCTCATCTCCAGTCCCTTACCTTTCGC
CTGAAACAACCCCAGCATCATCAGCCTCTGCAGTTAATCATAATGTCAGTGTAACTAATGTCAGCCTGGA
GGAGCCTGCCCCAGCCCCTCCCACCTCGCACGCATCACAGCCTGGTTGTTTAGGAGCACCAAGTGCTGAG
GCAGCTCACGTAGTGCTCAGAGGTGAAGGACCACCATTGCCGCCGCATGCAGACCCAGCAAAGGTGTACA
GGAAGGAGCCGTATTCTGAAGAAATGATGAGACAAAACCATATTTTAAAACAACCAGCTCTTGGTCACCC
AGGGCAGAGGCCAGATAAAGAGCCAAATCTAGCCTATGAACCCCAACTTCCATATATAGAAAAACAAGCC
AGCAGAGACCTTGAGCAGCCGTCATACAGGTATGAGGTCTCAAGCTACACAGACCAGTTTTCTCGGAACT
ATGACCATCGCCTACGGTTTGAAGATCGAATCCCTACCTATGAAGACCAGTGGTCATATTATGATGACAA
ACAGCCCTACCAACCTCGGCCTTTTGAGAATCAGCATCCCCGAGACCTGGACTCCAGACAACATCCCGAA
GAGGCTTCAGAACGAGGTTATTTCCAGCGTTTTGAAGAGCCAGCCCCTCTGTCGTACGACAGTAGAACAC
GCTATGAGCAGCTGCCTCGAACCTCTACTCTACGACATGAAGAGCAGCCAGCCCCTGCATATGAGGTGCA
CAACAGGTACAGGCCAGAGGCACAGCCCTATTCTTCAACAGGCCCTAAGTCATCTGAGCCCAAGCAGTAC
TTTGACCAGTACCCGCGAAGTTATGAGCAAGTTCCACCACCAGGCTTTACCTCCAAAACAGGCCATTACG
AGCCTCTCCATGGTGCTGCAGTTGTCCCTCCTCTGATACCTTCCTCTCAACAAAAGCCAGAAGTCCTGCC
CTCGGCTACCAAACCACAGCCTCCACCCCCAACCCTAACTGAGGAGGAGGAGGATCCAGCAATGAAACCA
CAGTCTGTGCTCACCAGAGTCAAAATGTTTGAAAACAAAAGATCTGCGTCTTTGGAGAACAAGAAAGATG
TGAATGACACTGCCAGCTTTAAGCCTCCGGAAGTAGCATCTAAACCTCCAGGTGCTTCTCTTGCTGGCCC
TAAACCTGTCCCTCAGAGTCAGTTTAGTGAGCACGACAAAACGCTCTACAGGCTCCCAGAGCCTCAGAAA
CCTCAAGTGAAGCCACCCGAAGATATTGTTCGATCAAATCATTACGACCCTGAAGAGGATGAAGAATATT
ACCGGAAACAGCTCTCCTACTTTGACCGAAGAAGTTTTGAGAGCAAGCCTTCTGCACATCTTCCTGCTGG
CCATCACTCAGAGCCTGCTAAGCCAGTCCATTCTCAGAGCCAGCCCAACTTCTCTAGTTACTCTTCAAAG
GGAAAACCCGAAACTGATGCTGTGGATAGATCATTCAGTGAGAAACGTTATGATCCAGCCCAGGCCACGC
CTCCTCCTCCTCCGTTGCCCTCACAGTACAGCCAGCCAGCTCCACCTCTGTCCAGCTCTTCTCTCCACAT
ACATTCCAAGGGCGCCCAGGGTGAAGGCAACTCAGTATCATTGGATTTTCAGAACTCATATATGTCCAAA
CCAGACCCACCCCCATCTCAGAGTAAACCAGCAACTTTCAGACCACCAACTCGAGAAGACCCCCCTCAGA
CTTTCTATCCGCAGAAAAGTTTCCCAGACAAAGCTCCAGTTAACGGAGCTGAGCAGACTCAGAAAACCAT
CACTCCGGTGTACAATCGATTCACACCAAAGCCGTACACAAGTTCTGCCCGGCCATTTGAACGCAAATTT
GAAAGTCCGAAGTTCAACCATAATCTTCTGCCAAGTGAAACTGTACATAAACCTGAATTGTCTTCAAAAA
CTCCCACTTCCCCAAAAACTCTTATGAAAGCTCATAGTTCAACACAGCCTCCAGAGTTTGACAGTGGAGT
TGAAACTTTCTCTGTTCACACAGATAAGCCTAAATATCAAATGAATAATATCAGCACCATGCCTAAAGCT
GTCCCTGTGAGTCCTTCAGCTGTGGAAGAAGATGAAGATGAGGATGGTCATACTGTAGTGGCTACAGCTC
GTGGCATTTTTAACAGCAATGGTGGTGTGTTGAGTTCCATAGAAACCGGTGTTAGTATAATTATCCCACA
AGGAGCCATTCCTGAAGGAATTGAGCAAGAAATCTATTTCAAAGTCTGCAGAGACAATAGCATTCTCCCA
CCTTTAGATAAAGAGAAAGGTGAAACTCTGCTGAGCCCCCTAGTGATGTGTGGGCCCCATGGCCTCAAGT
TCCTGAAGCCCGTGGAGCTACGCTTGCCACACTGTGACCCTAAAACCTGGCAAAACAAGTGTCTTCCTGG
AGATCCGAATTACCTTGTTGGAGCCAACTGTGTTTCTGTCCTGATTGACCACTTTTAA

Translation (1745 aa):
MSARAAAAKSTAMEETAIWEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAEGQLQ
ENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKKVQIPVSHPDPEPVSDNEDDSYDEEVHDPR
AGRGALANRRSEKSWARDRSASRERSLSPRSDRRSVASSQPAKPTKVTLVKSRKNEEYGLRLASHIFVKE
ISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRDERATLLNVPDLSDSIHS
ANASERDDISEIQSLASDHSGRSHDRPPRRSQSRSPDQRSEPSDHSTQSPQQPSNGSLRSREEERMSKPG
AISTPVKHVDDHPPKAVEEVTVEKNEKQTPTLPEPKPVYAQVGQPDVDLPVSPSDGALPNSAHEDGILRP
SMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDL
PKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAI
RIGKNHKEVERGIIPNKNRAEQLASVQYTLPKTAGGDRADFWRFRGLRSSKRNLRKSREDLSAQPVQTKF
PAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPDIYQIAKSEPRDAGTDHRSSGIIRLHTIKQIIDQ
DKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFT
TTINLNSMNDGWYGALKEAIQQQQNQLVWVSEGKADGATSDDLDLHDDRLSYLSAPGSEYSMYSTDSRHT
SDYEDTDTEGGAYTDQELDETLNDEVGTPPESAITRSSEPVREDSSGMHHENQTYPPYSPQAQPQAIHRI
DSPGLKPASQQKAEASSPVPYLSPETTPASSASAVNHNVSVTNVSLEEPAPAPPTSHASQPGCLGAPSAE
AAHVVLRGEGPPLPPHADPAKVYRKEPYSEEMMRQNHILKQPALGHPGQRPDKEPNLAYEPQLPYIEKQA
SRDLEQPSYRYEVSSYTDQFSRNYDHRLRFEDRIPTYEDQWSYYDDKQPYQPRPFENQHPRDLDSRQHPE
EASERGYFQRFEEPAPLSYDSRTRYEQLPRTSTLRHEEQPAPAYEVHNRYRPEAQPYSSTGPKSSEPKQY
FDQYPRSYEQVPPPGFTSKTGHYEPLHGAAVVPPLIPSSQQKPEVLPSATKPQPPPPTLTEEEEDPAMKP
QSVLTRVKMFENKRSASLENKKDVNDTASFKPPEVASKPPGASLAGPKPVPQSQFSEHDKTLYRLPEPQK
PQVKPPEDIVRSNHYDPEEDEEYYRKQLSYFDRRSFESKPSAHLPAGHHSEPAKPVHSQSQPNFSSYSSK
GKPETDAVDRSFSEKRYDPAQATPPPPPLPSQYSQPAPPLSSSSLHIHSKGAQGEGNSVSLDFQNSYMSK
PDPPPSQSKPATFRPPTREDPPQTFYPQKSFPDKAPVNGAEQTQKTITPVYNRFTPKPYTSSARPFERKF
ESPKFNHNLLPSETVHKPELSSKTPTSPKTLMKAHSSTQPPEFDSGVETFSVHTDKPKYQMNNISTMPKA
VPVSPSAVEEDEDEDGHTVVATARGIFNSNGGVLSSIETGVSIIIPQGAIPEGIEQEIYFKVCRDNSILP
PLDKEKGETLLSPLVMCGPHGLKFLKPVELRLPHCDPKTWQNKCLPGDPNYLVGANCVSVLIDHF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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