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Report for CCDS21308.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21308.1 Public Mus musculus 7 Slc6a5 23 108 98 CCDS HistoryNCBI Gene:104245Re-query CCDS DB by CCDS ID:21308.1Re-query CCDS DB by GeneID:104245See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21308.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056442.11 ENSMUSP00000058699.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056442.11Link to Ensembl Protein Viewer:ENSMUSP00000058699.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000056442Re-query CCDS DB by Protein ID:ENSMUSP00000058699
Original member Current member EBI ENSMUST00000107605.2 ENSMUSP00000103230.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107605.2Link to Ensembl Protein Viewer:ENSMUSP00000103230.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107605Re-query CCDS DB by Protein ID:ENSMUSP00000103230
Original member Current member EBI ENSMUST00000207753.1 ENSMUSP00000146917.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000207753.1Link to Ensembl Protein Viewer:ENSMUSP00000146917.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000207753Re-query CCDS DB by Protein ID:ENSMUSP00000146917
Original member NCBI NM_148931.3 NP_683733.2 Updated not alive Link to Nucleotide Sequence:NM_148931.3Link to Protein Sequence:NP_683733.2Re-query CCDS DB by Nucleotide ID:NM_148931Re-query CCDS DB by Protein ID:NP_683733
Current member NCBI NM_148931.4 NP_683733.2 Accepted alive Link to Nucleotide Sequence:NM_148931.4Link to Protein Sequence:NP_683733.2Re-query CCDS DB by Nucleotide ID:NM_148931Re-query CCDS DB by Protein ID:NP_683733Link to BLAST:NP_683733.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_683733.2 791 Q761V0-2 791 99.8736% 0 1

Chromosomal Locations for CCDS 21308.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 49911722 49912243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 49914712 49914850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 49917229 49917360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 49917593 49917766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 49927565 49927706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 49929985 49930117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 49936178 49936312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 49938297 49938400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 49941770 49941894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 49945498 49945610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 49946503 49946634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 49948241 49948340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 49951404 49951504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 49956398 49956565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 49959269 49959424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2376 nt):
ATGAATAAACAGCCAGCCAACATCTTGGAGGCAGCGGTGCCAGGCCACCGGGATAGTCCTCGTGCACCTA
GGACCAGCCCTGAACAGGATCTTCCTGCTGAGGCCCCCACGGCCACTGTCCAGCCGCCACGTGTGCCCAG
GTCGGCTTCCACCGGCGCCCAAACTTTCCAGTCTGCGGATGCGAGAGCCTGCGAGGCCCAGCAGTCCGGA
GTAGGGTTTTGTAATCTCAGCAGCCCCCGGGCACAAGCGACCTCCGCGGCCCTCCGGGACTTAAGCGAAG
GGCACAGCGCACAGGCCAATCCCCCTTCCGGGCCCGCCGGGGCTGGCAACGCTCTGCACTGCAAGATTCC
AGCTCTGCGTGGCCCGGAGGAGGACGCGAACGTGAGTGTGGGCAAGGGCACGCTGGAGCACAACAATACC
CCAGCCGTGGGCTGGGTGAATATGAGCCAGAGCACAGTAGTGTTGGGAACCGATGGCATCGCGTCGGTGC
TCCCGGGCAGCGTGGCCACCACTACCATACCGGAGGACGAGCAAGGGGATGAGAATAAGGCCCGAGGGAA
CTGGTCCAGCAAACTGGACTTCATCCTGTCCATGGTGGGGTACGCAGTGGGGCTGGGCAATGTTTGGAGG
TTTCCCTACCTGGCCTTCCAGAACGGGGGAGGCGCGTTCCTCATCCCTTACTTGATGATGCTGGCACTGG
CTGGCTTACCCATCTTCTTCCTAGAGGTGTCCCTGGGCCAGTTTGCCAGCCAGGGTCCTGTGTCTGTGTG
GAAGGCCATCCCAGCTCTGCAGGGTTGTGGCATTGCGATGCTCATCATCTCTGTCCTCATAGCCATATAC
TACAACGTCATCATCTGCTACACGCTCTTCTACCTGTTTGCCTCCTTCGTGTCTGTGCTGCCCTGGGGGT
CCTGCAACAACCCGTGGAACACACCAGAATGCAAAGATAAAACCAAACTTTTACTAGATTCCTGTGTTAT
CGGTGACCATCCCAAGATACAGATCAAGAACTCTACTTTCTGCATGACTGCCTATCCGAACTTGACAATG
GTTAACTTCACCAGCCAGACCAATAAGACATTTGTCAGCGGGAGTGAAGAGTACTTCAAGTATTTTGTGC
TGAAGATTTCTGCAGGGATTGAATATCCGGGTGAGATCCGGTGGCCCTTGGCCTTCTGCCTTTTCTTGGC
TTGGGTGATTGTGTACGCATCACTGGCGAAAGGAATTAAGTCATCAGGAAAAGTAGTCTACTTCACAGCC
ACATTCCCTTATGTCGTCCTGGTCATCCTCCTTATTCGAGGAGTCACCCTGCCTGGAGCTGGAGCCGGCA
TCTGGTACTTCATCACACCTAAGTGGGAAAAACTCACGGATGCCACGGTATGGAAGGATGCGGCCACTCA
GATTTTCTTCTCCCTGTCTGCGGCCTGGGGAGGGCTCATCACTCTTTCTTCTTACAACAAATTCCACAAC
AACTGCTACAGGGATACGTTAATTGTAACCTGCACTAACAGTGCCACTAGCATCTTTGCTGGGTTTGTCA
TCTTCTCTGTCATCGGCTTCATGGCCAACGAGCGCAAAGTCAACATTGAGAATGTGGCCGACCAAGGGCC
TGGCATTGCATTTGTGGTTTACCCTGAGGCCTTAACTAGGCTGCCTCTCTCTCCATTCTGGGCCATCATC
TTTTTTCTGATGCTTCTCACGCTTGGACTCGACACCATGTTTGCCACCATTGAGACCATCGTGACCTCCA
TCTCGGATGAGTTTCCCAAGTACCTGCGCACACACAAGCCTGTGTTCACCCTGGGCTGCTGCATCTGCTT
CTTCATTATGGGCTTCCCTATGATCACACAGGGTGGAATCTACATGTTTCAGCTTGTGGACACCTACGCT
GCCTCCTATGCCCTTGTCATCATTGCCATATTTGAGCTTGTTGGCATCTCCTATGTGTATGGCTTGCAGA
GATTCTGTGAAGACATCGAGATGATGATTGGATTCAAGCCCAACATTTTCTGGAAAGTCTGCTGGGCATT
CGTCACACCGACCATTTTGACTTTTATCCTTTGCTTCAGCTTCTACCAGTGGGAGCCCATGACCTATGGC
TCTTACCGCTACCCTAACTGGTCCATGGTGCTTGGATGGCTGATGCTCGCCTGCTCCGTTATCTGGATCC
CGATTATGTTCGTGATAAAAATGTATCTGGCTCCCGGGAGATTTATTGAGAGGCTGAAGTTGGTATGCTC
GCCACAGCCCGACTGGGGCCCATTCTTAGCTCAGCACCGCGGGGAACGCTACAAGAATATGATCGACCCC
TTGGGAACTTCGTCGCTGGGACTCAAGCTGCCCGTGAAGGATTTGGAACTGGGCACTCAGTGCTAG

Translation (791 aa):
MNKQPANILEAAVPGHRDSPRAPRTSPEQDLPAEAPTATVQPPRVPRSASTGAQTFQSADARACEAQQSG
VGFCNLSSPRAQATSAALRDLSEGHSAQANPPSGPAGAGNALHCKIPALRGPEEDANVSVGKGTLEHNNT
PAVGWVNMSQSTVVLGTDGIASVLPGSVATTTIPEDEQGDENKARGNWSSKLDFILSMVGYAVGLGNVWR
FPYLAFQNGGGAFLIPYLMMLALAGLPIFFLEVSLGQFASQGPVSVWKAIPALQGCGIAMLIISVLIAIY
YNVIICYTLFYLFASFVSVLPWGSCNNPWNTPECKDKTKLLLDSCVIGDHPKIQIKNSTFCMTAYPNLTM
VNFTSQTNKTFVSGSEEYFKYFVLKISAGIEYPGEIRWPLAFCLFLAWVIVYASLAKGIKSSGKVVYFTA
TFPYVVLVILLIRGVTLPGAGAGIWYFITPKWEKLTDATVWKDAATQIFFSLSAAWGGLITLSSYNKFHN
NCYRDTLIVTCTNSATSIFAGFVIFSVIGFMANERKVNIENVADQGPGIAFVVYPEALTRLPLSPFWAII
FFLMLLTLGLDTMFATIETIVTSISDEFPKYLRTHKPVFTLGCCICFFIMGFPMITQGGIYMFQLVDTYA
ASYALVIIAIFELVGISYVYGLQRFCEDIEMMIGFKPNIFWKVCWAFVTPTILTFILCFSFYQWEPMTYG
SYRYPNWSMVLGWLMLACSVIWIPIMFVIKMYLAPGRFIERLKLVCSPQPDWGPFLAQHRGERYKNMIDP
LGTSSLGLKLPVKDLELGTQC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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