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Report for CCDS21239.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21239.1 Public Mus musculus 7 Lin7b 23 108 98 CCDS HistoryNCBI Gene:22342Re-query CCDS DB by CCDS ID:21239.1Re-query CCDS DB by GeneID:22342See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21239.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003971.9 ENSMUSP00000003971.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003971.9Link to Ensembl Protein Viewer:ENSMUSP00000003971.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000003971Re-query CCDS DB by Protein ID:ENSMUSP00000003971
Original member Current member NCBI NM_011698.1 NP_035828.1 Accepted alive Link to Nucleotide Sequence:NM_011698.1Link to Protein Sequence:NP_035828.1Re-query CCDS DB by Nucleotide ID:NM_011698Re-query CCDS DB by Protein ID:NP_035828Link to BLAST:NP_035828.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035828.1 207 O88951 207 100% 0 0

Chromosomal Locations for CCDS 21239.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 45367977 45367998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45368304 45368467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45369141 45369350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45369915 45369986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45370127 45370245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45370522 45370558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (624 nt):
ATGGCTGCACTGGTGGAGCCGCTGGGGCTGGAGCGGGACGTGTCCCGGGCTGTGGAGCTGCTGGAGCGGC
TGCAGCGCAGCGGAGAGCTGCCCCCGCAGAAGCTGCAGGCCCTGCAGCGGGTCCTGCAGAGTCGCTTCTG
CTCCGCCATCCGCGAGGTGTATGAACAGCTCTATGACACGCTGGACATCACTGGCAGCGCCGAGGTGCGG
GCTCATGCCACAGCTAAGGCCACAGTGGCTGCTTTCACGGCCAGTGAGGGCCACGCACATCCCAGGGTCG
TGGAACTACCGAAGACTGATGAGGGTTTGGGCTTCAACATCATGGGTGGCAAGGAGCAGAACTCACCCAT
CTATATCTCTCGAGTCATCCCTGGGGGCGTGGCTGATCGCCATGGTGGCCTCAAGAGGGGAGACCAGCTG
CTGTCTGTGAATGGTGTGAGTGTGGAAGGCGAACACCATGAAAAGGCGGTGGAACTCCTGAAGGCTGCAC
AGGGCTCAGTGAAACTGGTGGTGCGCTACACTCCTCGGGTGCTGGAGGAGATGGAAGCCCGCTTCGAGAA
GATGCGATCTGCCCGTCGGCGCCAGCAGCACCACAGCTACACGTCCTTGGAGTCTCGAGGCTGA

Translation (207 aa):
MAALVEPLGLERDVSRAVELLERLQRSGELPPQKLQALQRVLQSRFCSAIREVYEQLYDTLDITGSAEVR
AHATAKATVAAFTASEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQL
LSVNGVSVEGEHHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFEKMRSARRRQQHHSYTSLESRG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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