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Report for CCDS21126.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21126.1 Public Mus musculus 7 Scn1b 23 108 98 CCDS HistoryNCBI Gene:20266Re-query CCDS DB by CCDS ID:21126.1Re-query CCDS DB by GeneID:20266See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21126.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098548.7 ENSMUSP00000096148.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098548.7Link to Ensembl Protein Viewer:ENSMUSP00000096148.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000098548Re-query CCDS DB by Protein ID:ENSMUSP00000096148
Original member Current member EBI ENSMUST00000211945.1 ENSMUSP00000148295.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000211945.1Link to Ensembl Protein Viewer:ENSMUSP00000148295.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000211945Re-query CCDS DB by Protein ID:ENSMUSP00000148295
Original member NCBI NM_011322.3 NP_035452.1 Updated not alive Link to Nucleotide Sequence:NM_011322.3Link to Protein Sequence:NP_035452.1Re-query CCDS DB by Nucleotide ID:NM_011322Re-query CCDS DB by Protein ID:NP_035452
Current member NCBI NM_011322.4 NP_035452.1 Accepted alive Link to Nucleotide Sequence:NM_011322.4Link to Protein Sequence:NP_035452.1Re-query CCDS DB by Nucleotide ID:NM_011322Re-query CCDS DB by Protein ID:NP_035452Link to BLAST:NP_035452.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035452.1 218 P97952 218 100% 0 0

Chromosomal Locations for CCDS 21126.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 31117229 31117295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31117706 31117847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31122906 31123146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31125055 31125221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31126666 31126705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (657 nt):
ATGGGGACGCTGCTGGCTCTCGTGGTGGGCGCGGCGCTGGTATCCTCAGCCTGGGGGGGCTGCGTGGAGG
TGGATTCCGATACCGAGGCTGTGTATGGGATGACCTTCAAAATCCTGTGCATCTCCTGTAAGCGTCGTAG
TGAGACCACCGCCGAAACCTTCACGGAGTGGACCTTCCGCCAGAAGGGGACAGAGGAATTTGTCAAGATC
CTACGCTATGAGAATGAGGTGCTGCAGCTGGAGGAAGATGAGCGCTTTGAGGGCCGAGTGGTGTGGAACG
GTAGTCGGGGCACCAAGGACCTGCAGGACCTGTCCATCTTCATCACCAACGTCACCTACAACCACTCTGG
CGACTACGAATGTCACGTCTACCGTCTCCTCTTCTTTGATAATTATGAGCACAACACCAGCGTCGTCAAG
AAGATCCACCTGGAGGTGGTGGACAAGGCCAACAGAGATATGGCATCCATCGTGTCAGAGATCATGATGT
ACGTGCTCATTGTGGTGTTGACCATATGGCTTGTGGCAGAGATGGTGTACTGCTACAAGAAGATTGCTGC
TGCTACGGAGGCTGCTGCACAAGAGAACGCCTCAGAATACCTGGCCATTACATCCGAGAGCAAAGAAAAC
TGTACAGGCGTCCAGGTGGCTGAATAG

Translation (218 aa):
MGTLLALVVGAALVSSAWGGCVEVDSDTEAVYGMTFKILCISCKRRSETTAETFTEWTFRQKGTEEFVKI
LRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYECHVYRLLFFDNYEHNTSVVK
KIHLEVVDKANRDMASIVSEIMMYVLIVVLTIWLVAEMVYCYKKIAAATEAAAQENASEYLAITSESKEN
CTGVQVAE


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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