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Report for CCDS21122.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21122.1 Public Mus musculus 7 Fxyd7 23 108 98 CCDS HistoryNCBI Gene:57780Re-query CCDS DB by CCDS ID:21122.1Re-query CCDS DB by GeneID:57780See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21122.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073892.5 ENSMUSP00000073555.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073892.5Link to Ensembl Protein Viewer:ENSMUSP00000073555.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000073892Re-query CCDS DB by Protein ID:ENSMUSP00000073555
Original member Current member NCBI NM_022007.1 NP_071290.1 Accepted alive Link to Nucleotide Sequence:NM_022007.1Link to Protein Sequence:NP_071290.1Re-query CCDS DB by Nucleotide ID:NM_022007Re-query CCDS DB by Protein ID:NP_071290Link to BLAST:NP_071290.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071290.1 80 P59648 80 100% 0 0

Chromosomal Locations for CCDS 21122.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 31042882 31042904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31044571 31044611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31044708 31044750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31044953 31045027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31047373 31047402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31051356 31051386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (243 nt):
ATGGCCACCCCAACCCAGAGCCCCACAAACGTTCCTGAAGAAACAGATCCTTTTTTCTATGACTATGCCA
CTGTGCAGACTGTGGGGATGACCCTGGCCACTATCATGTTCGTGCTGGGGATCATCATCATCCTGAGCAA
GAAGGTGAAGTGCAGGAAGGCGGATTCCAGGTCTGAGAGCCCAACATGCAAATCCTGTAAGTCGGAACTG
CCCTCCTCAGCCCCTGGAGGTGGCGGTGTGTAG

Translation (80 aa):
MATPTQSPTNVPEETDPFFYDYATVQTVGMTLATIMFVLGIIIILSKKVKCRKADSRSESPTCKSCKSEL
PSSAPGGGGV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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