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Report for CCDS21092.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21092.1 Public Mus musculus 7 Aplp1 23 108 98 CCDS HistoryNCBI Gene:11803Re-query CCDS DB by CCDS ID:21092.1Re-query CCDS DB by GeneID:11803See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21092.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006828.8 ENSMUSP00000006828.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006828.8Link to Ensembl Protein Viewer:ENSMUSP00000006828.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000006828Re-query CCDS DB by Protein ID:ENSMUSP00000006828
Original member NCBI NM_007467.3 NP_031493.2 Updated not alive Link to Nucleotide Sequence:NM_007467.3Link to Protein Sequence:NP_031493.2Re-query CCDS DB by Nucleotide ID:NM_007467Re-query CCDS DB by Protein ID:NP_031493
Current member NCBI NM_007467.4 NP_031493.2 Accepted alive Link to Nucleotide Sequence:NM_007467.4Link to Protein Sequence:NP_031493.2Re-query CCDS DB by Nucleotide ID:NM_007467Re-query CCDS DB by Protein ID:NP_031493Link to BLAST:NP_031493.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031493.2 654 Q03157 654 100% 0 0

Chromosomal Locations for CCDS 21092.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 30435293 30435391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30435476 30435619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30435746 30435808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30435973 30436043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30436179 30436202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30436787 30436894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30438178 30438277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30439935 30440063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30440144 30440302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30441055 30441129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30441642 30441772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30442170 30442360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30442480 30442613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30442798 30442910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30443092 30443224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30444318 30444461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30445322 30445468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1965 nt):
ATGGGGCCCACCAGCCCCGCCGCTCGCGGTCAGGGTCGCCGCTGGCGACCGCCGCCGCTGCCGCTGTTGC
TGCCACTGTCATTGCTGCTTCTGCGCGCGCAGCTCGCCGTCGGGAACCTGGCTGTTGGGAGCCCCAGCGC
GGCCGAGGCTCCGGGGTCGGCTCAAGTGGCTGGACTATGTGGGCGTCTAACCCTTCACCGGGACCTGCGC
ACCGGCCGCTGGGAACCAGACCCACAGCGATCACGACGCTGTCTTCTGGACCCGCAGCGCGTGCTGGAGT
ACTGCAGACAGATGTACCCCGAGCTGCACATAGCACGCGTGGAGCAGGCTGCACAGGCCATCCCGATGGA
GCGCTGGTGTGGGGGTACCCGGAGTGGCAGATGCGCCCACCCCCACCATGAGGTTGTGCCCTTCCATTGC
CTGCCTGGCGAATTCGTGAGTGAAGCCCTGCTAGTGCCCGAAGGCTGTCGGTTCTTGCACCAGGAGCGTA
TGGACCAGTGTGAGAGTTCAACCAGGAGGCATCAGGAGGCTCAGGAGGCCTGCAGCTCTCAGGGCCTCAT
CCTGCATGGCTCTGGCATGCTTTTGCCCTGTGGCTCTGATCGGTTCCGAGGTGTGGAGTATGTATGCTGT
CCACCTCCTGCAACTCCCAACCCATCTGGGATGGCAGCTGGTGACCCCTCTACCCGGTCCTGGCCCCTGG
GGGGCAGAGCAGAGGGAGGTGAGGATGAAGAGGAGGTGGAATCTTTCCCTCAGCCAGTAGACGATTACTT
CGTAGAGCCCCCTCAGGCTGAAGAAGAAGAGGAAGAGGAGGAAGAAAGGGCCCCACCTCCCAGCTCCCAC
ACCCCTGTCATGGTTAGCAGAGTCACTCCCACCCCAAGGCCTACTGATGGTGTGGATGTTTACTTTGGCA
TGCCTGGGGAAATCGGCGAGCATGAGGGTTTCCTGAGGGCCAAGATGGACCTGGAGGAGCGTAGGATGCG
CCAGATTAATGAGGTGATGCGTGAATGGGCCATGGCTGACAGCCAATCTAAGAACCTGCCAAAGGCGGAC
AGGCAGGCCCTGAATGAGCACTTCCAGTCCATTCTGCAGACCCTGGAAGAACAAGTGTCTGGTGAACGGC
AACGCCTGGTGGAGACCCACGCCACCAGAGTCATCGCTCTGATCAACGACCAGCGCCGAGCAGCCCTGGA
AGGTTTCCTGGCAGCCTTACAGGGCGATCCGCCTCAGGCTGAGCGAGTTCTGATGGCCCTGAGGCGCTAC
CTGCGCGCCGAGCAGAAAGAGCAGAGGCACACTCTGAGGCACTACCAGCACGTGGCCGCAGTGGATCCTG
AGAAGGCCCAGCAGATGCGCTTTCAGGTCCAGACCCACCTTCAGGTGATCGAAGAGCGAATGAATCAGAG
CCTGGGGCTGCTCGACCAGAACCCTCACCTGGCTCAGGAGCTGCGGCCACAGATCCAGGAGCTTCTCCTT
GCTGAACACTTGGGTCCCAGTGAACTGGACGCCTCTGTGCCCGGGAGCAGCAGTGAGGACAAAGGTAGCC
TCCAGCCTCCCGAATCCAAGGACGATCCCCCAGTGACCCTTCCAAAAGGGTCCACAGATCAAGAGTCATC
CTCCTCTGGGAGAGAGAAGCTAACTCCACTGGAGCAGTATGAGCAAAAGGTGAATGCATCCGCCCCGAGG
GGGTTTCCCTTCCACTCGTCAGATATCCAGCGGGATGAACTGGCTCCTTCCGGGACTGGAGTGTCCCGAG
AGGCCTTGTCAGGTCTGCTGATCATGGGAGCTGGAGGAGGCTCCCTCATTGTCCTATCCTTGCTGCTTCT
GCGCAAGAAGAAACCCTATGGGACTATCAGCCATGGAGTGGTGGAGGTGGACCCCATGCTGACCCTGGAG
GAGCAGCAGCTCCGGGAACTTCAGAGGCATGGCTATGAGAACCCCACCTACCGCTTCCTGGAAGAACGAC
CTTGA

Translation (654 aa):
MGPTSPAARGQGRRWRPPPLPLLLPLSLLLLRAQLAVGNLAVGSPSAAEAPGSAQVAGLCGRLTLHRDLR
TGRWEPDPQRSRRCLLDPQRVLEYCRQMYPELHIARVEQAAQAIPMERWCGGTRSGRCAHPHHEVVPFHC
LPGEFVSEALLVPEGCRFLHQERMDQCESSTRRHQEAQEACSSQGLILHGSGMLLPCGSDRFRGVEYVCC
PPPATPNPSGMAAGDPSTRSWPLGGRAEGGEDEEEVESFPQPVDDYFVEPPQAEEEEEEEEERAPPPSSH
TPVMVSRVTPTPRPTDGVDVYFGMPGEIGEHEGFLRAKMDLEERRMRQINEVMREWAMADSQSKNLPKAD
RQALNEHFQSILQTLEEQVSGERQRLVETHATRVIALINDQRRAALEGFLAALQGDPPQAERVLMALRRY
LRAEQKEQRHTLRHYQHVAAVDPEKAQQMRFQVQTHLQVIEERMNQSLGLLDQNPHLAQELRPQIQELLL
AEHLGPSELDASVPGSSSEDKGSLQPPESKDDPPVTLPKGSTDQESSSSGREKLTPLEQYEQKVNASAPR
GFPFHSSDIQRDELAPSGTGVSREALSGLLIMGAGGGSLIVLSLLLLRKKKPYGTISHGVVEVDPMLTLE
EQQLRELQRHGYENPTYRFLEERP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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