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Report for CCDS21076.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21076.1 Public Mus musculus 7 Zfp27 23 108 98 CCDS HistoryNCBI Gene:22689Re-query CCDS DB by CCDS ID:21076.1Re-query CCDS DB by GeneID:22689See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21076.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053521.14 ENSMUSP00000054012.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053521.14Link to Ensembl Protein Viewer:ENSMUSP00000054012.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000053521Re-query CCDS DB by Protein ID:ENSMUSP00000054012
Original member Current member EBI ENSMUST00000162592.7 ENSMUSP00000123953.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162592.7Link to Ensembl Protein Viewer:ENSMUSP00000123953.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162592Re-query CCDS DB by Protein ID:ENSMUSP00000123953
Original member Current member EBI ENSMUST00000161904.7 ENSMUSP00000124684.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161904.7Link to Ensembl Protein Viewer:ENSMUSP00000124684.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161904Re-query CCDS DB by Protein ID:ENSMUSP00000124684
Original member Current member EBI ENSMUST00000159920.1 ENSMUSP00000125232.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159920.1Link to Ensembl Protein Viewer:ENSMUSP00000125232.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159920Re-query CCDS DB by Protein ID:ENSMUSP00000125232
Original member Current member EBI ENSMUST00000172448.1 ENSMUSP00000127677.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172448.1Link to Ensembl Protein Viewer:ENSMUSP00000127677.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172448Re-query CCDS DB by Protein ID:ENSMUSP00000127677
Original member Current member NCBI NM_001037707.1 NP_001032796.1 Accepted alive Link to Nucleotide Sequence:NM_001037707.1Link to Protein Sequence:NP_001032796.1Re-query CCDS DB by Nucleotide ID:NM_001037707Re-query CCDS DB by Protein ID:NP_001032796Link to BLAST:NP_001032796.1
Original member Current member NCBI NM_001285797.1 NP_001272726.1 Accepted alive Link to Nucleotide Sequence:NM_001285797.1Link to Protein Sequence:NP_001272726.1Re-query CCDS DB by Nucleotide ID:NM_001285797Re-query CCDS DB by Protein ID:NP_001272726Link to BLAST:NP_001272726.1
Original member Current member NCBI NM_001285798.1 NP_001272727.1 Accepted alive Link to Nucleotide Sequence:NM_001285798.1Link to Protein Sequence:NP_001272727.1Re-query CCDS DB by Nucleotide ID:NM_001285798Re-query CCDS DB by Protein ID:NP_001272727Link to BLAST:NP_001272727.1
Original member Current member NCBI NM_011754.2 NP_035884.2 Accepted alive Link to Nucleotide Sequence:NM_011754.2Link to Protein Sequence:NP_035884.2Re-query CCDS DB by Nucleotide ID:NM_011754Re-query CCDS DB by Protein ID:NP_035884Link to BLAST:NP_035884.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032796.1 819 P10077-1 819 100% 0 0
NP_001272726.1 819 P10077-1 819 100% 0 0
NP_001272727.1 819 P10077-1 819 100% 0 0
NP_035884.2 819 P10077-1 819 100% 0 0

Chromosomal Locations for CCDS 21076.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 29894079 29896426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29898752 29898863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2460 nt):
ATGGATGTGACTATAGATTTCAGCAGAGAGGAGTGGCAGCATCTAGATCCTGCTCAAAGGAGTCTCTATC
GGGATGTGGTGCAGGAGACCTACAGTCACCTGCGCTCAGTGGAAGAACTACAGCAGATTGGTGACCAGAA
AAAGACCTACCAGCAAATAGGACATAAATCAGCGAGTGATATGGTTTTCATCACGAAGACGCTGGGTGCA
GAGAGTTGCCATGACTACTCAGGCGTTAGGAAGGTGATTCATGTGAACTCATACATTGTTCTCCCTCCCA
AGAGGCCACGTCACTGGGACCCACCTGAGGATGAGCCGAAGCATAGTTCAGATTTACAGACTCATGATGA
AAGTAATGGGCTGAAGAGAACTAAAAGGATTACTGAATATGGTAAAATTTCATCCTGTATCAACACTGAA
CATATTCTAACAGGAGAGAAATTACCGGACCATAATCAATGTGGAAAAGTCCTCGGTTATAAACAAATAC
CTTGTCAATATCAGAAAATTCATACTGGGGAGAAATCATATGAATGTGCTGAATTTGGAAAGATTTTTAC
CCAGAAGTCACAGCTCAGAGTACACGTGACGTCTCCTACAGGAGAAAAACTCTACGTGTGCGTCGAATGT
GGGAAGGCATGTTCTCAGACGTCAGAGTTCCTCACACATCAAAAAACCCACACCAGGGAGAAGCCCTATA
AATGCGGTGACTGTGGAAAGTCCTTTTTCCAAGTATCTTCTCTGTTCAGGCACCGGAGGATCCACACTGG
AGAAAAGCTCTACGACTGTAGCCATTGTGGGAAAGGCTTCTCTTACAACTCAGACCTCAGGATACATCAG
AAGATCCATACAGGAGAGAAACGCCATGGCTGCGTCGACTGTGGCAAAGCCTTCACACAAAAGTCCACAC
TGAGGATGCACCAGAAGATCCACACGGGCGAGAGGGCCTATGTCTGTATTGAGTGTGGACAGGCTTTTAT
CCAGAAGACACACCTGGTCGCACACCGAAGAATTCACACTGGAGAGAAGCCATACGCGTGTGACGGCTGT
GGCAAAGCCTTCCTTTCCAAGTCCCAACTCCTGGTCCACCAGCGAATTCACTCAAGAGTGAGGCCCTGTG
TATCTCTCGACCGTGCGAAACCCTTCAGCAGCGCTCCCAACCTCCTTCCGCGTAAGAAAGTTCAAATGAG
AGAGAAATCGTCCATCTGCGCGGAGTGTGGGAAGGCCTTTACCTACAGGTCGGAGCTAATCATTCATCAG
AGAACTCACACGGGAGAGAAGCCTTATCAGTGCGGGGACTGTGGCAAAGCCTTCACCCAGAAGTCAGCCC
TCACCGTGCACCGAAGAATCCACACGGGGGAGAAGTCGTATGTGTGTGTGAAGTGCGGGCTAGCCTTCGT
GCAAAGGGCACACTTGGATGCACACCAGGTGATTCACACTGGAGAAAAACCTTACCAGTGTGGTCATTGT
GGGAAATTCTTCACTTCCAAGTCGCAACTCCACGTGCACAAGCGGATTCACACGGGGGAAAAACCCTATG
TGTGCAGTAACTGTGGGAAGGCCTTTGCCAACAGGTCAAATCTCATCACACATCAGAAAACTCATACAGG
GGAGAAAGCCTATGTCTGTGCAAGGTGTGGGAAAGCATTCACTCAGAGGTCAGACCTGGTTACACACCAG
AGGATACATACCGGAGAGAAGCCATATGGGTGTAGCACCTGCGGGAAAGCCTTTACCCAGAAATCACACC
TCAGTATACACGAGAAGATTCACACCGGAGAGAGACAGTACGGATGCCGAGACTGTGGGAAAGCCTTCAA
CCAGAAATCCATACTCATCGTGCACCAGAAAATCCACACGGGGGAGAAACCGCACGTGTGTGCCGAGTGC
GGGCGAGCTTTCATCCGCAAGTCCAACTTCATCACCCATCAGCGCATCCATACTGGCGAGAAACCTTATG
GATGCACCGACTGCGGCAAGTCCTTTACCTCCAAGTCGCAGCTCCTGGTGCACCGGCCAATCCACACCGG
CGAGAAACCTTACGTGTGTGCCGAGTGTGGGAAAGCCTTTAGCGGCAGGTCAAATCTCAGCAAGCACCAG
AAGACTCACACTGGGGAGAAGCCGTACGCGTGTTCAGAGTGTGGGAAGTCCTTCAGGCAGAAGTCAGAGC
TGATTACACACCACAGAATCCACACTGGGGAGAAGCCGTACGATTGCGGCGACTGCGGGAAATCCTTCAC
TAAGAAATCCCAGCTCCAAGTGCATCAGCGAATTCACACAGGAGAGAAGCCGTACAGATGTGCCGAGTGC
GGGAAGGCCTTCACCGATAGGTCCAATTTGAATAAACATCAAACAACACACACCGGAGAGAAACCTTATA
AGTGTGTAGTCTGTGGGAAAGGCTTTGTGCAGAAGTCAGTGCTCAGCATTCATGAGAATGTTCACACCTC
GGCAGTATGA

Translation (819 aa):
MDVTIDFSREEWQHLDPAQRSLYRDVVQETYSHLRSVEELQQIGDQKKTYQQIGHKSASDMVFITKTLGA
ESCHDYSGVRKVIHVNSYIVLPPKRPRHWDPPEDEPKHSSDLQTHDESNGLKRTKRITEYGKISSCINTE
HILTGEKLPDHNQCGKVLGYKQIPCQYQKIHTGEKSYECAEFGKIFTQKSQLRVHVTSPTGEKLYVCVEC
GKACSQTSEFLTHQKTHTREKPYKCGDCGKSFFQVSSLFRHRRIHTGEKLYDCSHCGKGFSYNSDLRIHQ
KIHTGEKRHGCVDCGKAFTQKSTLRMHQKIHTGERAYVCIECGQAFIQKTHLVAHRRIHTGEKPYACDGC
GKAFLSKSQLLVHQRIHSRVRPCVSLDRAKPFSSAPNLLPRKKVQMREKSSICAECGKAFTYRSELIIHQ
RTHTGEKPYQCGDCGKAFTQKSALTVHRRIHTGEKSYVCVKCGLAFVQRAHLDAHQVIHTGEKPYQCGHC
GKFFTSKSQLHVHKRIHTGEKPYVCSNCGKAFANRSNLITHQKTHTGEKAYVCARCGKAFTQRSDLVTHQ
RIHTGEKPYGCSTCGKAFTQKSHLSIHEKIHTGERQYGCRDCGKAFNQKSILIVHQKIHTGEKPHVCAEC
GRAFIRKSNFITHQRIHTGEKPYGCTDCGKSFTSKSQLLVHRPIHTGEKPYVCAECGKAFSGRSNLSKHQ
KTHTGEKPYACSECGKSFRQKSELITHHRIHTGEKPYDCGDCGKSFTKKSQLQVHQRIHTGEKPYRCAEC
GKAFTDRSNLNKHQTTHTGEKPYKCVVCGKGFVQKSVLSIHENVHTSAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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