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Report for CCDS21043.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21043.1 Public Mus musculus 7 Paf1 23 108 98 CCDS HistoryNCBI Gene:54624Re-query CCDS DB by CCDS ID:21043.1Re-query CCDS DB by GeneID:54624See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21043.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003529.8 ENSMUSP00000003529.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003529.8Link to Ensembl Protein Viewer:ENSMUSP00000003529.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000003529Re-query CCDS DB by Protein ID:ENSMUSP00000003529
Original member Current member NCBI NM_019458.3 NP_062331.2 Accepted alive Link to Nucleotide Sequence:NM_019458.3Link to Protein Sequence:NP_062331.2Re-query CCDS DB by Nucleotide ID:NM_019458Re-query CCDS DB by Protein ID:NP_062331Link to BLAST:NP_062331.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062331.2 535 Q8K2T8 535 100% 0 0

Chromosomal Locations for CCDS 21043.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 28393208 28393254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28393669 28393698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28395043 28395135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28395418 28395539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28395629 28395695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28395771 28395872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28395952 28396057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28396134 28396202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28396284 28396387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28396610 28396726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28396821 28396949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28398448 28398553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28398659 28398749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28398826 28399250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1608 nt):
ATGGCGCCCACCATCCAGACCCAGGCCCAGAGGGAAGATGGCCACAGGCCCAATTCCCACCGGACCTTGC
CTGAGAGGTCTGGAGTAGTCTGCCGAGTCAAGTACTGCAATAGCCTTCCTGACATCCCATTTGACCCCAA
GTTCATCACCTACCCCTTCGACCAGAACAGGTTTGTTCAGTACAAAGCAACCTCCTTGGAGAAACAGCAC
AAACATGACCTCCTGACTGAGCCAGATCTGGGGGTCACCATTGATCTCATCAACCCTGACACCTACCGCA
TTGATCCCAATGTTCTTCTGGATCCGGCTGATGAGAAGCTTCTAGAAGAGGAGATTCAGGCTCCCACCAG
CTCTAAGAGATCCCAGCAGCATGCAAAGGTGGTACCGTGGATGCGTAAGACAGAGTATATCTCCACTGAG
TTCAACAGATATGGCATCTCCAATGAGAAGCCTGAAGTCAAGATTGGGGTTTCTGTGAAACAGCAGTTCA
CAGAGGAAGAAATATACAAAGACAGGGACAGCCAAATCACAGCCATTGAAAAGACTTTTGAAGATGCCCA
GAAATCGATCTCCCAGCATTACAGCAAGCCCCGAGTGACACCAGTGGAGGTCATGCCTGTCTTCCCAGAT
TTTAAGATGTGGATAAACCCATGTGCTCAGGTCATTTTTGACTCAGACCCAGCCCCCAAGGACACAAGTG
GTGCAGCTGCATTAGAGATGATGTCTCAGGCCATGATCAGGGGCATGATGGATGAGGAAGGGAACCAGTT
TGTGGCTTATTTTCTGCCTGTGGAAGAAACACTAAAGAAACGAAAGCGGGACCAAGAGGAAGAGATGGAC
TATGCACCAGATGATGTGTATGACTATAAGATTGCTCGGGAATACAACTGGAATGTGAAGAACAAGGCCA
GTAAGGGCTATGAGGAGAACTATTTCTTCATCTTCAGAGAGGGTGACGGAGTTTACTACAATGAGCTGGA
GACCAGGGTCCGTCTAAGTAAGCGCCGGGCCAAGGCTGGGGTTCAGTCAGGTACCAATGCCTTGCTTGTC
GTCAAACACCGTGACATGAATGAGAAGGAATTAGAAGCCCAGGAGGCACGAAAGGCCCAGTTGGAAAACC
ACGAACCAGAGGAAGAGGAGGAGGAAGAGATGGAGGCTGAAGAGAAAGAAGCTGGGGGCTCAGATGAGGA
ACAGGAGAAGGGTAGCAGCAGTGAGAAAGAAGGCAGCGAGGATGAACACTCTGGAAGTGAGAGTGACCGA
GAAGAGGGTGACAGAGATGAGGCAAGTGACAAGAGTGGCAGCGGTGAGGATGAAAGCAGTGAGGATGAAG
CACGTGCTGCCCGGGACAAAGAGGAGATTTTTGGTAGTGATGCTGATTCAGAAGATGATGCTGACTCTGA
TGATGAGGACAGAGGGCAGGCCCACAGGGGCAGTGACAATGACTCGGACAGCGGCAGTGATGGTGGTGGC
CAGAGGAGCCGCAGCCAGAGCAGGAGTCGTAGCCGGAGTGCCAGCCCCTTCCCCAGTGGCAGTGAGCACT
CAGCTCAGGAAGATGGCAGTGAAGCAGCAGCCTCTGATTCCAGTGAGGCTGACAGTGACAGTGATTGA

Translation (535 aa):
MAPTIQTQAQREDGHRPNSHRTLPERSGVVCRVKYCNSLPDIPFDPKFITYPFDQNRFVQYKATSLEKQH
KHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEIQAPTSSKRSQQHAKVVPWMRKTEYISTE
FNRYGISNEKPEVKIGVSVKQQFTEEEIYKDRDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPD
FKMWINPCAQVIFDSDPAPKDTSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMD
YAPDDVYDYKIAREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLV
VKHRDMNEKELEAQEARKAQLENHEPEEEEEEEMEAEEKEAGGSDEEQEKGSSSEKEGSEDEHSGSESDR
EEGDRDEASDKSGSGEDESSEDEARAARDKEEIFGSDADSEDDADSDDEDRGQAHRGSDNDSDSGSDGGG
QRSRSQSRSRSRSASPFPSGSEHSAQEDGSEAAASDSSEADSDSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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