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Report for CCDS20955.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20955.1 Public Mus musculus 7 Xrcc1 23 108 98 CCDS HistoryNCBI Gene:22594Re-query CCDS DB by CCDS ID:20955.1Re-query CCDS DB by GeneID:22594See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20955.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063249.8 ENSMUSP00000070995.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063249.8Link to Ensembl Protein Viewer:ENSMUSP00000070995.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000063249Re-query CCDS DB by Protein ID:ENSMUSP00000070995
Original member Current member EBI ENSMUST00000205573.1 ENSMUSP00000146105.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000205573.1Link to Ensembl Protein Viewer:ENSMUSP00000146105.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000205573Re-query CCDS DB by Protein ID:ENSMUSP00000146105
Original member Current member NCBI NM_009532.5 NP_033558.3 Accepted alive Link to Nucleotide Sequence:NM_009532.5Link to Protein Sequence:NP_033558.3Re-query CCDS DB by Nucleotide ID:NM_009532Re-query CCDS DB by Protein ID:NP_033558Link to BLAST:NP_033558.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033558.3 631 Q60596 631 100% 0 0

Chromosomal Locations for CCDS 20955.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 24547309 24547359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24547790 24547882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24559736 24559852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24565536 24565694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24566219 24566293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24566389 24566500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24566858 24566967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24567039 24567144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24567314 24567572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24567810 24567926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24570216 24570309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24570449 24570578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24570872 24570926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24571015 24571151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24572209 24572299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24573054 24573129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24573225 24573338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1896 nt):
ATGCCGGAGATCAGCCTCCGCCACGTCGTGTCCTGCAGCAGCCAGGACTCGACCCATTGTGCCGAAAATC
TTCTCAAGGCGGACACTTACCGGAAGTGGCGGGCAGCCAAGGCAGGAGAGAAGACCATCTCTGTGGTCCT
ACAGTTGGAGAAGGAGGAGCAGATCCACAGTGTGGACATTGGCAATGATGGCTCGGCCTTTGTGGAGGTG
CTAGTGGGCAGCTCGGCTGGAGGGGCCACAGCTGGTGAACAGGACTATGAGGTCCTTCTGGTCACCTCCT
CTTTCATGTCCCCCTCTGAGAGCCGAAGTGGCTCAAATCCCAACCGTGTTCGCATTTTTGGACCTGACAA
GTTAGTCCGGGCAGCAGCGGAGAAGCGCTGGGACCGTGTTAAAATTGTGTGCAGCCAGCCATACAGCAAG
GACTCGCCATACGGCCTGAGTTTTGTGAAGTTTCACAGCCCTCCTGACAAAGATGAGGCAGAGGCTACAT
CTCAGAAGGTGACAGTGACCAAGCTCGGCCAGTTTCGTGTGAAAGAGGAGGATGACAGTGCCAACTCCCT
GAAGCCAGGGGCTCTCTTCTTCAGTCGTATCAACAAGACGTCATCAGCCTCTACGAGTGACCCAGCAGGA
CCCAGCTATGCAGCAGCTACACTGCAGGCCTCTAGTGCAGCCTCCTCAGCCTCTCCAGTCCCCAAGGTTG
TGGGCAGCTCTTCCAAGCCTCAGGAGCCTCCCAAAGGGAAGAGAAAACTGGACTTGAGTCTAGAAGACAG
GAAACCTCCCAGCAAACCCTCGGCAGGGCCATCCACCCTCAAGAGACCCAAATTGTCTGTCCCTAGTCGT
ACTCCAGCTGCAGCTCCAGCCTCTACCCCAGCACAGAGAGCCGTCCCAGGGAAGCCCCGGGGAGAAGGCA
CAGAGCCTAGGGGGGCTCGCACTGGACCCCAAGAGCTTGGCAAGATCCTGCAAGGGGTGGTGGTGGTGCT
CAGTGGCTTCCAGAACCCCTTCCGCTCAGAGCTCCGGGACAAGGCCCTGGAACTGGGGGCCAAGTATCGG
CCAGACTGGACCCCAGACAGCACACATCTCATCTGTGCCTTTGCCAACACTCCCAAATACAGCCAGGTCC
TGGGCCTTGGAGGCCGGATTGTGCGTAAAGAGTGGGTGCTGGACTGTCACCACATGCGGCGCCGGCTGCC
CTCCCGGAGGTACCTCATGGCAGGCCTTGGATCCAGCAGTGAGGACGAAGGGGACTCTCACAGTGAGAGC
GGCGAAGACGAAGCTCCCAAGCTTCCCCAAAAGCGGCCCCAGCCCAAAGCCAAGACCCAGGCAGCAGGAC
CCAGCTCACCCCCGAGGCCACCAACCCCAAAAGAGACCAAAGCACCGTCACCAGGACCCCAGGACAATAG
TGACACTGAGGGGGAAGAGTCAGAAGGACGGGACAACGGGGCAGAAGATTCTGGGGACACCGAGGATGAA
CTGAGGAGGGTGGCCAAACAGAGGGAACAAAGGCAGCCCCCAGCCCCAGAGGAGAATGGCGAGGACCCGT
ATGCAGGCTCCACAGATGAGAACACAGACAGTGAGACCCCCTCAGAGGCTGACCTGCCAATCCCAGAGCT
CCCAGACTTCTTCGAGGGCAAACACTTCTTCCTGTATGGCGAGTTCCCTGGGGATGAGAGGAGGAGGCTC
ATCCGCTACGTGACCGCTTTCAATGGCGAGCTCGAGGACTATATGAATGAGCGGGTCCAGTTCGTCATCA
CGGCCCAGGAGTGGGACCCCAACTTTGAGGAGGCCCTGATGGAAAACCCTTCCCTGGCCTTCGTGCGGCC
CCGGTGGATCTACAGTTGTAATGAGAAGCAGAAGTTACTCCCCCATCAGCTCTATGGGGTGGTGCCCCAG
GCCTGA

Translation (631 aa):
MPEISLRHVVSCSSQDSTHCAENLLKADTYRKWRAAKAGEKTISVVLQLEKEEQIHSVDIGNDGSAFVEV
LVGSSAGGATAGEQDYEVLLVTSSFMSPSESRSGSNPNRVRIFGPDKLVRAAAEKRWDRVKIVCSQPYSK
DSPYGLSFVKFHSPPDKDEAEATSQKVTVTKLGQFRVKEEDDSANSLKPGALFFSRINKTSSASTSDPAG
PSYAAATLQASSAASSASPVPKVVGSSSKPQEPPKGKRKLDLSLEDRKPPSKPSAGPSTLKRPKLSVPSR
TPAAAPASTPAQRAVPGKPRGEGTEPRGARTGPQELGKILQGVVVVLSGFQNPFRSELRDKALELGAKYR
PDWTPDSTHLICAFANTPKYSQVLGLGGRIVRKEWVLDCHHMRRRLPSRRYLMAGLGSSSEDEGDSHSES
GEDEAPKLPQKRPQPKAKTQAAGPSSPPRPPTPKETKAPSPGPQDNSDTEGEESEGRDNGAEDSGDTEDE
LRRVAKQREQRQPPAPEENGEDPYAGSTDENTDSETPSEADLPIPELPDFFEGKHFFLYGEFPGDERRRL
IRYVTAFNGELEDYMNERVQFVITAQEWDPNFEEALMENPSLAFVRPRWIYSCNEKQKLLPHQLYGVVPQ
A


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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