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Report for CCDS20912.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20912.1 Public Mus musculus 7 Apoe 23 108 98 CCDS HistoryNCBI Gene:11816Re-query CCDS DB by CCDS ID:20912.1Re-query CCDS DB by GeneID:11816See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 20912.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003066.15 ENSMUSP00000003066.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003066.15Link to Ensembl Protein Viewer:ENSMUSP00000003066.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000003066Re-query CCDS DB by Protein ID:ENSMUSP00000003066
Original member Current member EBI ENSMUST00000174064.8 ENSMUSP00000133302.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000174064.8Link to Ensembl Protein Viewer:ENSMUSP00000133302.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000174064Re-query CCDS DB by Protein ID:ENSMUSP00000133302
Original member Current member EBI ENSMUST00000173739.7 ENSMUSP00000133371.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173739.7Link to Ensembl Protein Viewer:ENSMUSP00000133371.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000173739Re-query CCDS DB by Protein ID:ENSMUSP00000133371
Original member Current member EBI ENSMUST00000174355.7 ENSMUSP00000134160.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000174355.7Link to Ensembl Protein Viewer:ENSMUSP00000134160.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000174355Re-query CCDS DB by Protein ID:ENSMUSP00000134160
Original member Current member NCBI NM_001305819.1 NP_001292748.1 Accepted alive Link to Nucleotide Sequence:NM_001305819.1Link to Protein Sequence:NP_001292748.1Re-query CCDS DB by Nucleotide ID:NM_001305819Re-query CCDS DB by Protein ID:NP_001292748Link to BLAST:NP_001292748.1
Original member Current member NCBI NM_001305843.1 NP_001292772.1 Accepted alive Link to Nucleotide Sequence:NM_001305843.1Link to Protein Sequence:NP_001292772.1Re-query CCDS DB by Nucleotide ID:NM_001305843Re-query CCDS DB by Protein ID:NP_001292772Link to BLAST:NP_001292772.1
Original member Current member NCBI NM_001305844.1 NP_001292773.1 Accepted alive Link to Nucleotide Sequence:NM_001305844.1Link to Protein Sequence:NP_001292773.1Re-query CCDS DB by Nucleotide ID:NM_001305844Re-query CCDS DB by Protein ID:NP_001292773Link to BLAST:NP_001292773.1
Original member Current member NCBI NM_009696.4 NP_033826.2 Accepted alive Link to Nucleotide Sequence:NM_009696.4Link to Protein Sequence:NP_033826.2Re-query CCDS DB by Nucleotide ID:NM_009696Re-query CCDS DB by Protein ID:NP_033826Link to BLAST:NP_033826.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001292748.1 311 P08226 311 100% 0 0
NP_001292772.1 311 P08226 311 100% 0 0
NP_001292773.1 311 P08226 311 100% 0 0
NP_033826.2 311 P08226 311 100% 0 0

Chromosomal Locations for CCDS 20912.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 19696380 19697103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19697479 19697647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19698188 19698230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGAAGGCTCTGTGGGCCGTGCTGTTGGTCACATTGCTGACAGGATGCCTAGCCGAGGGAGAGCCGGAGG
TGACAGATCAGCTCGAGTGGCAAAGCAACCAACCCTGGGAGCAGGCCCTGAACCGCTTCTGGGATTACCT
GCGCTGGGTGCAGACGCTGTCTGACCAGGTCCAGGAAGAGCTGCAGAGCTCCCAAGTCACACAAGAACTG
ACGGCACTGATGGAGGACACTATGACGGAAGTAAAGGCTTACAAAAAGGAGCTGGAGGAACAGCTGGGTC
CAGTGGCGGAGGAGACACGGGCCAGGCTGGGCAAAGAGGTGCAGGCGGCACAGGCCCGACTCGGAGCCGA
CATGGAGGATCTACGCAACCGACTCGGGCAGTACCGCAACGAGGTGCACACCATGCTGGGCCAGAGCACA
GAGGAGATACGGGCGCGGCTCTCCACACACCTGCGCAAGATGCGCAAGCGCTTGATGCGGGATGCCGAGG
ATCTGCAGAAGCGCCTAGCTGTGTACAAGGCAGGGGCACGCGAGGGCGCCGAGCGCGGTGTGAGTGCCAT
CCGTGAGCGCCTGGGGCCTCTGGTGGAGCAAGGTCGCCAGCGCACTGCCAACCTAGGCGCTGGGGCCGCC
CAGCCTCTGCGCGATCGCGCCCAGGCTTTTGGTGACCGCATCCGAGGGCGGCTGGAGGAAGTGGGCAACC
AGGCCCGTGACCGCCTAGAGGAGGTGCGTGAGCACATGGAGGAGGTGCGCTCCAAGATGGAGGAACAGAC
CCAGCAAATACGCCTGCAGGCGGAGATCTTCCAGGCCCGCCTCAAGGGCTGGTTCGAGCCAATAGTGGAA
GACATGCATCGCCAGTGGGCAAACCTGATGGAGAAGATACAGGCCTCTGTGGCTACCAACCCCATCATCA
CCCCAGTGGCCCAGGAGAATCAATGA

Translation (311 aa):
MKALWAVLLVTLLTGCLAEGEPEVTDQLEWQSNQPWEQALNRFWDYLRWVQTLSDQVQEELQSSQVTQEL
TALMEDTMTEVKAYKKELEEQLGPVAEETRARLGKEVQAAQARLGADMEDLRNRLGQYRNEVHTMLGQST
EEIRARLSTHLRKMRKRLMRDAEDLQKRLAVYKAGAREGAERGVSAIRERLGPLVEQGRQRTANLGAGAA
QPLRDRAQAFGDRIRGRLEEVGNQARDRLEEVREHMEEVRSKMEEQTQQIRLQAEIFQARLKGWFEPIVE
DMHRQWANLMEKIQASVATNPIITPVAQENQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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