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Report for CCDS20898.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20898.1 Public Mus musculus 7 Ercc1 23 108 98 CCDS HistoryNCBI Gene:13870Re-query CCDS DB by CCDS ID:20898.1Re-query CCDS DB by GeneID:13870See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20898.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003645.8 ENSMUSP00000003645.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003645.8Link to Ensembl Protein Viewer:ENSMUSP00000003645.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000003645Re-query CCDS DB by Protein ID:ENSMUSP00000003645
Original member NCBI NM_007948.2 NP_031974.2 Updated not alive Link to Nucleotide Sequence:NM_007948.2Link to Protein Sequence:NP_031974.2Re-query CCDS DB by Nucleotide ID:NM_007948Re-query CCDS DB by Protein ID:NP_031974
Current member NCBI NM_007948.3 NP_031974.2 Accepted alive Link to Nucleotide Sequence:NM_007948.3Link to Protein Sequence:NP_031974.2Re-query CCDS DB by Nucleotide ID:NM_007948Re-query CCDS DB by Protein ID:NP_031974Link to BLAST:NP_031974.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031974.2 298 P07903 298 100% 0 0

Chromosomal Locations for CCDS 20898.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 19345613 19345717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19348401 19348616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19350161 19350264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19350693 19350792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19352629 19352705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19354326 19354425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19355101 19355172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19355293 19355361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19356419 19356472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (897 nt):
ATGGACCCTGGGAAGGACGAGGAAAGTCGGCCACAGCCCTCAGGACCACCCACCAGGAGGAAGTTTGTTA
TCCCACTGGAGGAAGAAGAGGTGCCCTGTGCAGGGGTCAAGCCCTTATTCAGATCGTCACGGAATCCCAC
CATCCCAGCAACCTCAGCCCACGTGGCCCCTCAGACGTATGCTGAGTACGCCATCACCCAGCCTCCAGGA
GGGGCTGGGGCCACAGTGCCCACAGGCTCTGAACCTGCGGCAGGAGAGAACCCCAGCCAGACCCTGAAAA
CAGGAGCAAAGTCTAATAGCATCATCGTGAGCCCGAGGCAGAGGGGCAACCCCGTGTTGAAGTTTGTGCG
CAATGTGCCCTGGGAATTCGGTGAGGTGATTCCCGATTATGTGCTGGGCCAGAGCACCTGCGCCCTTTTC
CTCAGCCTCCGCTACCACAACCTCCATCCAGACTACATCCATGAACGGCTGCAGAGCCTGGGGAAGAACT
TCGCCCTTCGTGTGCTGCTGGTTCAAGTGGATGTGAAAGATCCCCAGCAGGCTCTCAAGGAGCTGGCTAA
GATGTGCATCTTGGCTGACTGCACCCTGGTCCTGGCCTGGAGTGCAGAGGAAGCAGGGCGGTACCTGGAG
ACCTACAAGGCGTATGAGCAGAAGCCAGCCGACCTCCTTATGGAAAAGCTGGAGCAGAACTTCCTATCAC
GGGCCACTGAGTGTCTGACCACCGTGAAATCTGTGAACAAGACCGACAGCCAGACCCTCCTGGCTACATT
TGGATCCCTGGAACAGCTCTTCACCGCATCAAGGGAGGATCTAGCCTTATGCCCGGGCCTGGGCCCACAG
AAGGCCCGCAGGCTCTTTGAAGTACTACACGAACCCTTCCTCAAAGTGCCTCGATGA

Translation (298 aa):
MDPGKDEESRPQPSGPPTRRKFVIPLEEEEVPCAGVKPLFRSSRNPTIPATSAHVAPQTYAEYAITQPPG
GAGATVPTGSEPAAGENPSQTLKTGAKSNSIIVSPRQRGNPVLKFVRNVPWEFGEVIPDYVLGQSTCALF
LSLRYHNLHPDYIHERLQSLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLVLAWSAEEAGRYLE
TYKAYEQKPADLLMEKLEQNFLSRATECLTTVKSVNKTDSQTLLATFGSLEQLFTASREDLALCPGLGPQ
KARRLFEVLHEPFLKVPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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