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Report for CCDS20843.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20843.1 Public Mus musculus 7 Napa 23 108 98 CCDS HistoryNCBI Gene:108124Re-query CCDS DB by CCDS ID:20843.1Re-query CCDS DB by GeneID:108124See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20843.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006181.6 ENSMUSP00000006181.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006181.6Link to Ensembl Protein Viewer:ENSMUSP00000006181.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000006181Re-query CCDS DB by Protein ID:ENSMUSP00000006181
Original member Current member NCBI NM_025898.4 NP_080174.1 Accepted alive Link to Nucleotide Sequence:NM_025898.4Link to Protein Sequence:NP_080174.1Re-query CCDS DB by Nucleotide ID:NM_025898Re-query CCDS DB by Protein ID:NP_080174Link to BLAST:NP_080174.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080174.1 295 Q9DB05 295 100% 0 0

Chromosomal Locations for CCDS 20843.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 16098677 16098774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16107553 16107632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16109051 16109167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16112584 16112630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16113112 16113189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16113350 16113405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16113476 16113560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16114121 16114225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16115203 16115271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16115600 16115650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16116464 16116565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (888 nt):
ATGGACAACTCCGGGAAGCAGGCTGAGGCTATGGCGCTGCTGGCTGAAGCGGAGCGCAAGGTGAAGAACT
CGCAGTCCTTCTTCTCCGGCCTCTTTGGAGGCTCATCCAAAATAGAGGAAGCATGCGAGATCTATGCCAG
AGCGGCGAACATGTTCAAGATGGCCAAGAACTGGAGCGCTGCTGGGAACGCTTTCTGCCAGGCTGCCCAA
CTACACCTACAGCTCCAAAGCAAGCACGATGCAGCCACCTGCTTTGTGGACGCTGGCAATGCTTTCAAGA
AAGCTGACCCCCAAGAGGCCATTAACTGTCTGATGAGAGCAATTGAGATCTATACAGACATGGGCAGATT
CACAATCGCAGCCAAGCACCACATCTCCATCGCTGAGATCTATGAGACAGAACTGGTGGATGTAGAGAAG
GCCATCGCCCACTATGAGCAATCTGCAGACTACTACAAAGGAGAAGAGTCCAACAGCTCAGCCAACAAGT
GTCTGCTGAAGGTGGCTGGCTACGCCGCACAGCTGGAGCAGTACCAGAAGGCTATCGACATCTATGAGCA
GGTGGGGACCAGTGCCATGGACAGTCCCCTCCTCAAGTACAGCGCCAAAGACTACTTCTTCAAGGCGGCC
CTCTGCCACTTCTGCATTGACATGCTCAACGCCAAGCTCGCTGTTCAGAAGTATGAGGAGCTCTTCCCGG
CCTTCTCGGATTCCCGGGAATGCAAGCTGATGAAAAAGCTGCTGGAAGCCCATGAGGAACAGAATGTGGA
CAGCTACACAGAGGCGGTGAAGGAATATGACTCCATCTCCAGACTGGACCAGTGGCTTACCACCATGCTT
CTGCGCATAAAGAAGACCATTCAGGGTGACGAGGAGGACCTGCGCTAG

Translation (295 aa):
MDNSGKQAEAMALLAEAERKVKNSQSFFSGLFGGSSKIEEACEIYARAANMFKMAKNWSAAGNAFCQAAQ
LHLQLQSKHDAATCFVDAGNAFKKADPQEAINCLMRAIEIYTDMGRFTIAAKHHISIAEIYETELVDVEK
AIAHYEQSADYYKGEESNSSANKCLLKVAGYAAQLEQYQKAIDIYEQVGTSAMDSPLLKYSAKDYFFKAA
LCHFCIDMLNAKLAVQKYEELFPAFSDSRECKLMKKLLEAHEEQNVDSYTEAVKEYDSISRLDQWLTTML
LRIKKTIQGDEEDLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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