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Report for CCDS20643.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20643.1 Public Mus musculus 6 Ddx47 23 108 98 CCDS HistoryNCBI Gene:67755Re-query CCDS DB by CCDS ID:20643.1Re-query CCDS DB by GeneID:67755See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20643.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032326.10 ENSMUSP00000032326.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032326.10Link to Ensembl Protein Viewer:ENSMUSP00000032326.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000032326Re-query CCDS DB by Protein ID:ENSMUSP00000032326
Original member Current member NCBI NM_026360.3 NP_080636.2 Accepted alive Link to Nucleotide Sequence:NM_026360.3Link to Protein Sequence:NP_080636.2Re-query CCDS DB by Nucleotide ID:NM_026360Re-query CCDS DB by Protein ID:NP_080636Link to BLAST:NP_080636.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080636.2 455 Q9CWX9 455 100% 0 0

Chromosomal Locations for CCDS 20643.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 135011642 135011728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135012302 135012395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135015195 135015383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135015576 135015647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135015822 135015940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135016582 135016653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135017121 135017237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135018051 135018197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135018974 135019111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135020616 135020686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135021449 135021578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135023279 135023410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1368 nt):
ATGGCGGCGGACGAGGAACCCGATTCCCCCTCTGGAGCCCTTCAGACAGCTGCGGAAGAGGAGGAAACGA
AAACATTTAAAGACCTGGGTGTTACGGATGTATTGTGTGAAGCTTGTGACCAGTTGGGATGGGCAAAGCC
CACCAAGATCCAGATCGAAGCTATTCCTTTGGCCTTGCAAGGTCGTGATATTATTGGGTTGGCAGAAACG
GGATCTGGGAAAACAGGTGCCTTTGCTTTGCCCATCCTGAATGCCCTGCTGGAGACGCCCCAGCGACTGT
TCGCCCTGGTCCTCACCCCTACTCGAGAGTTGGCCTTTCAGATCTCTGAGCAGTTCGAGGCCCTGGGGTC
ATCTATTGGAGTGCAGTGTGCTGTCATTGTTGGTGGAATTGATTCAATGTCTCAGTCACTAGCATTGGCC
AAAAAACCACATATAGTAATAGCTACTCCTGGCCGACTGATTGACCACTTGGAAAATACCAAAGGCTTCA
ACTTAAGAGCTCTTAAGTACTTGGTCATGGATGAAGCAGACCGGATACTGAACATGGATTTTGAGACAGA
GGTTGACAAGATCCTCAAAGTGATTCCCCGAGATCGGAAAACATTTCTCTTTTCTGCCACCATGACCAAG
AAGGTACAAAAACTTCAGCGTGCAGCTCTTAAGAACCCTGTGAAATGTGCTGTGTCCTCTAAGTACCAGA
CTGTGGAGAAACTGCAGCAGTATTACCTTTTTATTCCCTCGAAATTCAAGGATACCTACCTGGTTTATAT
TCTCAATGAACTGGCTGGAAACTCCTTTATGATATTCTGCAGCACCTGTAACAACACTCAGAGAACAGCT
TTGCTGCTCCGAAATCTCGGGTTCACTGCCATCCCCCTCCATGGACAGATGAGTCAGAGCAAGCGCCTCG
GATCCCTTAATAAGTTTAAGGCTAAGGCGAGGTCCATTCTTCTAGCGACTGATGTCGCCAGCAGAGGTCT
GGACATACCCCATGTGGATGTAGTGGTCAATTTTGACATTCCGACTCATTCTAAGGATTATATCCATCGA
GTTGGACGAACCGCGAGAGCTGGGCGCTCTGGGAAGGCCATTACTTTTGTAACACAGTATGACGTGGAAC
TCTTCCAGCGCATCGAGCACTTGATTGGAAAGAAGCTGCCTGTCTTTCCGACGCAGGATGAGGAGGTCAT
GATGCTCACGGAACGTGTGAATGAGGCCCAGAGGTTTGCCCGGATGGAGTTAAGGGAGCACGGAGAAAAG
AAGAAACGGAAGCGAGAGGATGCAGGAGATGATGATGATAAGGAGGGCGCCATTGGTGTGAGGAACAAGG
TGGCTGGGGGCAAAATGAAGAAGCGGAAAGGCCGCTAA

Translation (455 aa):
MAADEEPDSPSGALQTAAEEEETKTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAET
GSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALA
KKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTK
KVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTA
LLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHR
VGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKLPVFPTQDEEVMMLTERVNEAQRFARMELREHGEK
KKRKREDAGDDDDKEGAIGVRNKVAGGKMKKRKGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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