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Report for CCDS20524.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20524.1 Public Mus musculus 6 Emg1 23 108 98 CCDS HistoryNCBI Gene:14791Re-query CCDS DB by CCDS ID:20524.1Re-query CCDS DB by GeneID:14791See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20524.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004379.7 ENSMUSP00000004379.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004379.7Link to Ensembl Protein Viewer:ENSMUSP00000004379.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000004379Re-query CCDS DB by Protein ID:ENSMUSP00000004379
Original member NCBI NM_013536.2 NP_038564.1 Updated not alive Link to Nucleotide Sequence:NM_013536.2Link to Protein Sequence:NP_038564.1Re-query CCDS DB by Nucleotide ID:NM_013536Re-query CCDS DB by Protein ID:NP_038564
Current member NCBI NM_013536.3 NP_038564.1 Accepted alive Link to Nucleotide Sequence:NM_013536.3Link to Protein Sequence:NP_038564.1Re-query CCDS DB by Nucleotide ID:NM_013536Re-query CCDS DB by Protein ID:NP_038564Link to BLAST:NP_038564.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038564.1 244 O35130 244 100% 0 0

Chromosomal Locations for CCDS 20524.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 124704545 124704658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124704939 124705088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124705158 124705216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124705515 124705656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124705741 124705842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124711876 124712043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (735 nt):
ATGTCTGCGGCCAGTGGTGGCTTCCAACCTCGTGAGCGGCGATTTTCAGTGCAGGAGCAGGACTGGGAGA
CTACGCCGCCTAAGAAGCTCCGGCTTGGGGCAGGAAGCAAGTGCGGAGGCCGGAGGCTCATTGTGGTGCT
GGAAGGGGCCAGTCTGGAGACAGTCAAGGTAGGGAAAACTTACGAGCTACTCAACTGTGACAGGCACAAG
TCCATGTTGTTGAAGAATGGACGGGACCCAGGGGAAGTCAGACCAGACATCACCCACCAGAGCCTGCTGA
TGCTTATGGACAGCCCCCTGAACCGAGCTGGCTTGCTACAGGTTTACATCCACACACAGAAGAACGTGCT
GATTGAAGTGAACCCCCAGACTCGAATTCCTAGAACCTTTGACCGATTTTGTGGCCTCATGGTTCAGCTT
TTACACAAACTGAGCGTCCGAGCAGCCGACGGCCCTCAGAAGCTATTGAAGGTAATTAAGAATCCAGTGT
CCGACCACTTCCCAGTTGGCTGTATGAAAATTGGCACTTCCTTTTCTGTTGAAGACATCAGTGACATTCG
AGAGTTGGTGCCCAGTAGTGACCCAGTTGTGTTTGTGGTGGGGGCCTTTGCCCATGGCAAGGTCAGTGTG
GAGTACACAGAAAAGATGGTGTCCATCAGCAACTATCCACTCTCTGCTGCGCTTACCTGTGCTAAAGTCA
CCACAGCTTTTGAAGAAGTATGGGGTGTCATTTGA

Translation (244 aa):
MSAASGGFQPRERRFSVQEQDWETTPPKKLRLGAGSKCGGRRLIVVLEGASLETVKVGKTYELLNCDRHK
SMLLKNGRDPGEVRPDITHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQL
LHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKIGTSFSVEDISDIRELVPSSDPVVFVVGAFAHGKVSV
EYTEKMVSISNYPLSAALTCAKVTTAFEEVWGVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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