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Report for CCDS20498.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20498.1 Public Mus musculus 6 Apobec1 23 108 98 CCDS HistoryNCBI Gene:11810Re-query CCDS DB by CCDS ID:20498.1Re-query CCDS DB by GeneID:11810See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20498.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112585.7 ENSMUSP00000108204.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112585.7Link to Ensembl Protein Viewer:ENSMUSP00000108204.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112585Re-query CCDS DB by Protein ID:ENSMUSP00000108204
Original member Current member EBI ENSMUST00000112586.7 ENSMUSP00000108205.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112586.7Link to Ensembl Protein Viewer:ENSMUSP00000108205.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112586Re-query CCDS DB by Protein ID:ENSMUSP00000108205
Original member Current member EBI ENSMUST00000112587.10 ENSMUSP00000108206.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112587.10Link to Ensembl Protein Viewer:ENSMUSP00000108206.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000112587Re-query CCDS DB by Protein ID:ENSMUSP00000108206
Original member NCBI NM_001134391.1 NP_001127863.1 Updated not alive Link to Nucleotide Sequence:NM_001134391.1Link to Protein Sequence:NP_001127863.1Re-query CCDS DB by Nucleotide ID:NM_001134391Re-query CCDS DB by Protein ID:NP_001127863
Current member NCBI NM_001134391.2 NP_001127863.1 Accepted alive Link to Nucleotide Sequence:NM_001134391.2Link to Protein Sequence:NP_001127863.1Re-query CCDS DB by Nucleotide ID:NM_001134391Re-query CCDS DB by Protein ID:NP_001127863Link to BLAST:NP_001127863.1
Original member NCBI NM_031159.3 NP_112436.1 Updated not alive Link to Nucleotide Sequence:NM_031159.3Link to Protein Sequence:NP_112436.1Re-query CCDS DB by Nucleotide ID:NM_031159Re-query CCDS DB by Protein ID:NP_112436
Current member NCBI NM_031159.4 NP_112436.1 Accepted alive Link to Nucleotide Sequence:NM_031159.4Link to Protein Sequence:NP_112436.1Re-query CCDS DB by Nucleotide ID:NM_031159Re-query CCDS DB by Protein ID:NP_112436Link to BLAST:NP_112436.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001127863.1 229 P51908 229 100% 0 0
NP_112436.1 229 P51908 229 100% 0 0

Chromosomal Locations for CCDS 20498.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 122578807 122578935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122580688 122580806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122581353 122581750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122588145 122588172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122591087 122591102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (690 nt):
ATGAGTTCCGAGACAGGCCCTGTAGCTGTTGATCCCACTCTGAGGAGAAGAATTGAGCCCCACGAGTTTG
AAGTCTTCTTTGACCCCCGGGAGCTTCGGAAAGAGACCTGTCTGCTGTATGAGATCAACTGGGGTGGAAG
GCACAGTGTCTGGCGACACACGAGCCAAAACACCAGCAACCACGTTGAAGTCAACTTCTTAGAAAAATTT
ACTACAGAAAGATACTTTCGTCCGAACACCAGATGCTCCATTACCTGGTTCCTGTCCTGGAGTCCCTGCG
GGGAGTGCTCCAGGGCCATTACAGAGTTTCTGAGCCGACACCCCTATGTAACTCTGTTTATTTACATAGC
ACGGCTTTATCACCACACGGATCAGCGAAACCGCCAAGGACTCAGGGACCTTATTAGCAGCGGTGTGACT
ATCCAGATCATGACAGAGCAAGAGTATTGTTACTGCTGGAGGAATTTCGTCAACTACCCCCCTTCAAACG
AAGCTTATTGGCCAAGGTACCCCCATCTGTGGGTGAAACTGTATGTACTGGAGCTCTACTGCATCATTTT
AGGACTTCCACCCTGTTTAAAAATTTTAAGAAGAAAGCAACCTCAACTCACGTTTTTCACAATTACTCTT
CAAACCTGCCATTACCAAAGGATACCACCCCATCTCCTTTGGGCTACAGGGTTGAAATGA

Translation (229 aa):
MSSETGPVAVDPTLRRRIEPHEFEVFFDPRELRKETCLLYEINWGGRHSVWRHTSQNTSNHVEVNFLEKF
TTERYFRPNTRCSITWFLSWSPCGECSRAITEFLSRHPYVTLFIYIARLYHHTDQRNRQGLRDLISSGVT
IQIMTEQEYCYCWRNFVNYPPSNEAYWPRYPHLWVKLYVLELYCIILGLPPCLKILRRKQPQLTFFTITL
QTCHYQRIPPHLLWATGLK


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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