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Report for CCDS20482.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20482.1 Public Mus musculus 6 Il17ra 23 108 98 CCDS HistoryNCBI Gene:16172Re-query CCDS DB by CCDS ID:20482.1Re-query CCDS DB by GeneID:16172See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20482.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002976.4 ENSMUSP00000002976.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002976.4Link to Ensembl Protein Viewer:ENSMUSP00000002976.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000002976Re-query CCDS DB by Protein ID:ENSMUSP00000002976
Original member Current member NCBI NM_008359.2 NP_032385.1 Accepted alive Link to Nucleotide Sequence:NM_008359.2Link to Protein Sequence:NP_032385.1Re-query CCDS DB by Nucleotide ID:NM_008359Re-query CCDS DB by Protein ID:NP_032385Link to BLAST:NP_032385.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032385.1 864 Q60943 864 100% 0 0

Chromosomal Locations for CCDS 20482.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 120463329 120463466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120472092 120472116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120472926 120473072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120473754 120473866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120474290 120474416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120475229 120475276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120475456 120475619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120476890 120476973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120477396 120477480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120478164 120478175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120478375 120478482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120480003 120480044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120480983 120482484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2595 nt):
ATGGCGATTCGGCGCTGCTGGCCACGGGTCGTCCCCGGGCCCGCGCTGGGATGGCTGCTTCTGCTGCTGA
ACGTTCTGGCCCCGGGCCGCGCCTCCCCGCGCCTCCTCGACTTCCCGGCTCCGGTCTGCGCGCAGGAGGG
GCTGAGCTGCAGAGTCAAGAATAGTACTTGTCTGGATGACAGCTGGATCCACCCCAAAAACCTGACCCCG
TCTTCCCCAAAAAACATCTATATCAATCTTAGTGTTTCCTCTACCCAGCACGGAGAATTAGTCCCTGTGT
TGCATGTTGAGTGGACCCTGCAGACAGATGCCAGCATCCTGTACCTCGAGGGTGCAGAGCTGTCCGTCCT
GCAGCTGAACACCAATGAGCGGCTGTGTGTCAAGTTCCAGTTTCTGTCCATGCTGCAGCATCACCGTAAG
CGGTGGCGGTTTTCCTTCAGCCACTTTGTGGTAGATCCTGGCCAGGAGTATGAAGTGACTGTTCACCACC
TGCCGAAGCCCATCCCTGATGGGGACCCAAACCACAAATCCAAGATCATCTTTGTGCCTGACTGTGAGGA
CAGCAAGATGAAGATGACTACCTCATGCGTGAGCTCAGGCAGCCTTTGGGATCCCAACATCACTGTGGAG
ACCTTGGACACACAGCATCTGCGAGTGGACTTCACCCTGTGGAATGAATCCACCCCCTACCAGGTCCTGC
TGGAAAGTTTCTCCGACTCAGAGAACCACAGCTGCTTTGATGTCGTTAAACAAATATTTGCGCCCAGGCA
AGAAGAATTCCATCAGCGAGCTAATGTCACATTCACTCTAAGCAAGTTTCACTGGTGCTGCCATCACCAC
GTGCAGGTCCAGCCCTTCTTCAGCAGCTGCCTAAATGACTGTTTGAGACACGCTGTGACTGTGCCCTGCC
CAGTAATCTCAAATACCACAGTTCCCAAGCCAGTTGCAGACTACATTCCCCTGTGGGTGTATGGCCTCAT
CACACTCATCGCCATTCTGCTGGTGGGATCTGTCATCGTGCTGATCATCTGTATGACCTGGAGGCTTTCT
GGCGCCGATCAAGAGAAACATGGTGATGACTCCAAAATCAATGGCATCTTGCCCGTAGCAGACCTGACTC
CCCCACCCCTGAGGCCCAGGAAGGTCTGGATCGTCTACTCGGCCGACCACCCCCTCTATGTGGAGGTGGT
CCTAAAGTTCGCCCAGTTCCTGATCACTGCCTGTGGCACTGAAGTAGCCCTTGACCTCCTGGAAGAGCAG
GTTATCTCTGAGGTGGGGGTCATGACCTGGGTGAGCCGACAGAAGCAGGAGATGGTGGAGAGCAACTCCA
AAATCATCATCCTGTGTTCCCGAGGCACCCAAGCAAAGTGGAAAGCTATCTTGGGTTGGGCTGAGCCTGC
TGTCCAGCTACGGTGTGACCACTGGAAGCCTGCTGGGGACCTTTTCACTGCAGCCATGAACATGATCCTG
CCAGACTTCAAGAGGCCAGCCTGCTTCGGCACCTACGTTGTTTGCTACTTCAGTGGCATCTGTAGTGAGA
GGGATGTCCCCGACCTCTTCAACATCACCTCCAGGTACCCACTCATGGACAGATTTGAGGAGGTTTACTT
CCGGATCCAGGACCTGGAGATGTTTGAACCCGGCCGGATGCACCATGTCAGAGAGCTCACAGGGGACAAT
TACCTGCAGAGCCCTAGTGGCCGGCAGCTCAAGGAGGCTGTGCTTAGGTTCCAGGAGTGGCAAACCCAGT
GCCCCGACTGGTTCGAGCGTGAGAACCTCTGCTTAGCTGATGGCCAAGATCTTCCCTCCCTGGATGAAGA
AGTGTTTGAAGACCCACTGCTGCCACCAGGGGGAGGAATTGTCAAACAGCAGCCCCTGGTGCGGGAACTC
CCATCTGACGGCTGCCTTGTGGTAGATGTCTGTGTCAGTGAGGAAGAAAGTAGAATGGCAAAGCTGGACC
CTCAGCTATGGCCACAGAGAGAGCTAGTGGCTCACACCCTCCAAAGCATGGTGCTGCCAGCAGAGCAGGT
CCCTGCAGCTCATGTGGTGGAGCCTCTCCATCTCCCAGACGGCAGTGGAGCAGCTGCCCAGCTGCCCATG
ACAGAGGACAGCGAGGCTTGCCCGCTGCTGGGGGTCCAGAGGAACAGCATCCTTTGCCTCCCCGTGGACT
CAGATGACTTGCCACTCTGTAGCACCCCAATGATGTCACCTGACCACCTCCAAGGCGATGCAAGAGAGCA
GCTAGAAAGCCTAATGCTCTCGGTGCTGCAGCAGAGCCTGAGTGGACAGCCCCTGGAGAGCTGGCCGAGG
CCAGAGGTGGTCCTCGAGGGCTGCACACCCTCTGAGGAGGAGCAGCGGCAGTCGGTGCAGTCGGACCAGG
GCTACATCTCCAGGAGCTCCCCGCAGCCCCCCGAGTGGCTCACGGAGGAGGAAGAGCTAGAACTGGGTGA
GCCCGTTGAGTCTCTCTCTCCTGAGGAACTACGGAGCCTGAGGAAGCTCCAGAGGCAGCTTTTCTTCTGG
GAGCTCGAGAAGAACCCTGGCTGGAACAGCTTGGAGCCACGGAGACCCACCCCAGAAGAGCAGAATCCCT
CCTAG

Translation (864 aa):
MAIRRCWPRVVPGPALGWLLLLLNVLAPGRASPRLLDFPAPVCAQEGLSCRVKNSTCLDDSWIHPKNLTP
SSPKNIYINLSVSSTQHGELVPVLHVEWTLQTDASILYLEGAELSVLQLNTNERLCVKFQFLSMLQHHRK
RWRFSFSHFVVDPGQEYEVTVHHLPKPIPDGDPNHKSKIIFVPDCEDSKMKMTTSCVSSGSLWDPNITVE
TLDTQHLRVDFTLWNESTPYQVLLESFSDSENHSCFDVVKQIFAPRQEEFHQRANVTFTLSKFHWCCHHH
VQVQPFFSSCLNDCLRHAVTVPCPVISNTTVPKPVADYIPLWVYGLITLIAILLVGSVIVLIICMTWRLS
GADQEKHGDDSKINGILPVADLTPPPLRPRKVWIVYSADHPLYVEVVLKFAQFLITACGTEVALDLLEEQ
VISEVGVMTWVSRQKQEMVESNSKIIILCSRGTQAKWKAILGWAEPAVQLRCDHWKPAGDLFTAAMNMIL
PDFKRPACFGTYVVCYFSGICSERDVPDLFNITSRYPLMDRFEEVYFRIQDLEMFEPGRMHHVRELTGDN
YLQSPSGRQLKEAVLRFQEWQTQCPDWFERENLCLADGQDLPSLDEEVFEDPLLPPGGGIVKQQPLVREL
PSDGCLVVDVCVSEEESRMAKLDPQLWPQRELVAHTLQSMVLPAEQVPAAHVVEPLHLPDGSGAAAQLPM
TEDSEACPLLGVQRNSILCLPVDSDDLPLCSTPMMSPDHLQGDAREQLESLMLSVLQQSLSGQPLESWPR
PEVVLEGCTPSEEEQRQSVQSDQGYISRSSPQPPEWLTEEEELELGEPVESLSPEELRSLRKLQRQLFFW
ELEKNPGWNSLEPRRPTPEEQNPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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