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Report for CCDS20481.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20481.1 Public Mus musculus 6 Ccdc77 23 108 98 CCDS HistoryNCBI Gene:67200Re-query CCDS DB by CCDS ID:20481.1Re-query CCDS DB by GeneID:67200See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20481.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032283.11 ENSMUSP00000032283.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032283.11Link to Ensembl Protein Viewer:ENSMUSP00000032283.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000032283Re-query CCDS DB by Protein ID:ENSMUSP00000032283
Original member Current member NCBI NM_026028.5 NP_080304.1 Accepted alive Link to Nucleotide Sequence:NM_026028.5Link to Protein Sequence:NP_080304.1Re-query CCDS DB by Nucleotide ID:NM_026028Re-query CCDS DB by Protein ID:NP_080304Link to BLAST:NP_080304.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080304.1 489 Q9CZH8-1 489 100% 0 0

Chromosomal Locations for CCDS 20481.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 120325344 120325493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120329094 120329246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120329334 120329459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120331812 120332031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120334769 120334917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120338069 120338160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120339135 120339198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120341973 120342069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120348388 120348530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120350207 120350444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120354001 120354038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1470 nt):
ATGAACTTCACTCCGACACGGACACCCATCTGCAGAAAAATATCGTTTGCCTCTAAACGTGGTGCTGGCT
CTGGCTTTGGTGATACCAACAGGTGGAAGAAAATGGCAGACTCAATGGAGTCAACACCCCTGCCTTCAGT
CGAGGATCGTCTGGCTGTCCTTTGCCCTTCTCAGGAGCTTCTGGAGTATTATCAGAAGAAGATGGCTAAC
TGTGAGTCAGAGAATGAAGATCTGCTGAAGAAGCTAGAGCTCTACAGAGAAGCTTGCGAAGAGCAGCATA
AACTTGAGTGGAACTTGCAGCAGAGGGAGGAAGAGATTGCAGAATTGCAGAAAGCTCTGAGTGATATGCA
GGTCTGCCTCTTCCAGGAAAGGGAACATGTTTTACGACTCTACTCAGAAAATGACCGACTAAGAATCAGA
GAACTGGAAGACAAGAAAAAGATTCAGAATCTGTTAGCTCTGGTGGGCCCAGATGCTGGTGAAGTGACCT
ATTTTCATAAGGAGCCTCCCCACAGAGTCAGCATTCTCCAGAAGACTCTGCAGGCTGCAGTCGCATGTGA
GCCTTCTGCTTCCAAAGCAGATCCTGGAGTAAGCAAAAGACAAGTAAGAATAAAGGACAAGGAGGGCATT
TCTGAGCGCCACCAGAGGGACACAGAGATGCTGCTCCTGCAGGTGGAAGCACTTCAGGCGCAGCTGGGAG
AGCAGACAAAGCTTTCGAGAGAGCAAGTGGAGGGGCTCATGGAGGACAGACGGATCCGAGTCGAGGAGAT
CCAAGTTCAGCACCAGAGAAACCAAGAGAAAATCATGGAGCTAACCAAGAGTCTCCATCATACCCAAGAA
CTGCTCTACGAGAGCACCAAGGACTTTCTACAACTAAAATTTGAAAACCAAAATAAAGAGAAGGTATGGA
TGCTTGAGAAAGATCACCTGATGTCAAAGATTACGCAGTATAGAGCGCAGTGTAAGAAGAAAGAGGACAA
ACTTGGAAAAGTTGTTCCCATTTTACACGAGAGTCATCATACTCAAAATGAATATATTAAGTCTCTTAAG
GATAAGCTAATACAAGAGAAAAAGCTGTCCAACATGTACCAAGAACAGTGCATTTCCCTAGAAGAGGAAC
TTGCTCGAATTCGGGAGGAAGAAGGAGTGAGGAGAGAGATCTTCAAGGATCGCTCCAACAAGATGGGCAA
GCGCTTACAGATAATGACAAAGCGCTATCAGGCCTTGGAGCATCGACGAGCCCTAGAAGTAGAAGGCTTC
AAGACGGACATTAAGTCTCTCCGACAGAAGCTGCGAGACCTGGAGCAAATGCTCTACAAGGCAACCATGA
ACAACACCCATGGAGATCAGGACCTGGCCATGCTGTGTGAAGTCCGTGACAGCAACAGGAGAGCTCATAA
GATACAGGGGGAACTGAAGAACCTCAAGTCTAAAGTGTTTGGGCTGGAGAATGCGCTTAGGCTGTGCTGA

Translation (489 aa):
MNFTPTRTPICRKISFASKRGAGSGFGDTNRWKKMADSMESTPLPSVEDRLAVLCPSQELLEYYQKKMAN
CESENEDLLKKLELYREACEEQHKLEWNLQQREEEIAELQKALSDMQVCLFQEREHVLRLYSENDRLRIR
ELEDKKKIQNLLALVGPDAGEVTYFHKEPPHRVSILQKTLQAAVACEPSASKADPGVSKRQVRIKDKEGI
SERHQRDTEMLLLQVEALQAQLGEQTKLSREQVEGLMEDRRIRVEEIQVQHQRNQEKIMELTKSLHHTQE
LLYESTKDFLQLKFENQNKEKVWMLEKDHLMSKITQYRAQCKKKEDKLGKVVPILHESHHTQNEYIKSLK
DKLIQEKKLSNMYQEQCISLEEELARIREEEGVRREIFKDRSNKMGKRLQIMTKRYQALEHRRALEVEGF
KTDIKSLRQKLRDLEQMLYKATMNNTHGDQDLAMLCEVRDSNRRAHKIQGELKNLKSKVFGLENALRLC


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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