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Report for CCDS20414.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20414.1 Public Mus musculus 6 Ogg1 23 108 98 CCDS HistoryNCBI Gene:18294Re-query CCDS DB by CCDS ID:20414.1Re-query CCDS DB by GeneID:18294See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20414.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032406.14 ENSMUSP00000032406.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032406.14Link to Ensembl Protein Viewer:ENSMUSP00000032406.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000032406Re-query CCDS DB by Protein ID:ENSMUSP00000032406
Original member NCBI NM_010957.4 NP_035087.3 Updated not alive Link to Nucleotide Sequence:NM_010957.4Link to Protein Sequence:NP_035087.3Re-query CCDS DB by Nucleotide ID:NM_010957Re-query CCDS DB by Protein ID:NP_035087
Current member NCBI NM_010957.5 NP_035087.3 Accepted alive Link to Nucleotide Sequence:NM_010957.5Link to Protein Sequence:NP_035087.3Re-query CCDS DB by Nucleotide ID:NM_010957Re-query CCDS DB by Protein ID:NP_035087Link to BLAST:NP_035087.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035087.3 345 O08760 345 100% 0 0

Chromosomal Locations for CCDS 20414.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 113327226 113327362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113328365 113328612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113329229 113329408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113331771 113331952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113333342 113333492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113333631 113333680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113333842 113333931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1038 nt):
ATGTTATTCCGTTCCTGGCTGCCTAGCAGCATGAGACATCGCACCCTAAGCTCCAGCCCGGCCCTCTGGG
CCTCTATCCCGTGTCCACGCTCTGAGCTGCGTCTGGACTTGGTTTTAGCTTCTGGACAGTCCTTCCGGTG
GAAGGAGCAGAGCCCTGCTCACTGGAGTGGCGTGCTGGCAGATCAAGTATGGACACTGACTCAGACGGAG
GACCAGCTCTATTGCACTGTGTACCGAGGAGACGACAGCCAGGTCAGCAGGCCCACCCTAGAGGAGCTGG
AAACCCTACACAAGTACTTTCAGCTAGATGTCAGCCTGGCACAGCTGTATAGCCACTGGGCTTCTGTAGA
CTCCCACTTCCAAAGAGTGGCCCAGAAATTCCAAGGTGTGAGACTGCTGAGACAAGACCCCACTGAGTGC
CTTTTCTCTTTCATCTGTTCCTCCAACAACAACATTGCTCGCATTACTGGCATGGTGGAACGGCTCTGCC
AGGCCTTTGGACCTCGACTCATTCAGCTTGATGATGTCACTTATCATGGCTTCCCAAACCTCCATGCCCT
GGCTGGTCCAGAAGCAGAGACTCACCTGAGGAAGTTGGGCCTGGGGTACCGTGCCCGCTATGTACGTGCC
AGTGCCAAAGCCATCCTCGAAGAGCAAGGTGGGCCAGCTTGGCTGCAGCAGCTTCGAGTGGCCCCTTATG
AAGAGGCCCACAAGGCCCTCTGCACCCTGCCCGGGGTGGGCGCCAAGGTGGCTGACTGCATCTGCTTAAT
GGCCCTTGACAAACCCCAGGCTGTGCCCGTGGATGTCCATGTATGGCAGATTGCCCATCGTGACTACGGC
TGGCATCCTAAGACATCCCAGGCTAAGGGCCCGAGCCCTTTGGCCAACAAAGAACTGGGAAACTTTTTCC
GGAATCTGTGGGGACCTTATGCTGGCTGGGCCCAAGCAGTGCTGTTCAGTGCTGACCTTCGCCAACCAAG
CCTGTCTCGGGAGCCACCAGCAAAGCGCAAAAAGGGATCTAAGAGGCCAGAGGGCTAG

Translation (345 aa):
MLFRSWLPSSMRHRTLSSSPALWASIPCPRSELRLDLVLASGQSFRWKEQSPAHWSGVLADQVWTLTQTE
DQLYCTVYRGDDSQVSRPTLEELETLHKYFQLDVSLAQLYSHWASVDSHFQRVAQKFQGVRLLRQDPTEC
LFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPNLHALAGPEAETHLRKLGLGYRARYVRA
SAKAILEEQGGPAWLQQLRVAPYEEAHKALCTLPGVGAKVADCICLMALDKPQAVPVDVHVWQIAHRDYG
WHPKTSQAKGPSPLANKELGNFFRNLWGPYAGWAQAVLFSADLRQPSLSREPPAKRKKGSKRPEG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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