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Report for CCDS20412.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20412.2 Public Mus musculus 6 Mtmr14 23 108 98 CCDS HistoryNCBI Gene:97287Re-query CCDS DB by CCDS ID:20412.2Re-query CCDS DB by GeneID:97287See the combined annotation on chromosome 6 in Sequence Viewer

Public Note for CCDS 20412.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation transcript and protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 20412.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113146.8 ENSMUSP00000108771.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113146.8Link to Ensembl Protein Viewer:ENSMUSP00000108771.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113146Re-query CCDS DB by Protein ID:ENSMUSP00000108771
Original member Current member NCBI NM_026849.2 NP_081125.2 Accepted alive Link to Nucleotide Sequence:NM_026849.2Link to Protein Sequence:NP_081125.2Re-query CCDS DB by Nucleotide ID:NM_026849Re-query CCDS DB by Protein ID:NP_081125Link to BLAST:NP_081125.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081125.2 648 Q8VEL2 648 100% 0 0

Chromosomal Locations for CCDS 20412.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 113237966 113238121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113240285 113240433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113249871 113249979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113253731 113253806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113254090 113254150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113255816 113255938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113257023 113257096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113260588 113260658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113261206 113261280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113265444 113265510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113265970 113266055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113266260 113266336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113266559 113266595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113268628 113268695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113269501 113269559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113269732 113269870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113270522 113270701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113277790 113277945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113280603 113280786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1947 nt):
ATGGCGGGTGCTCGGGCCGCCGCCGCCGCCTCGGCGGGTTCCACCGCCTCGTCGGGCAGCCCGCCGCCTC
AGGAGCCCGGGCTCTGGGAGCTGCTGGAGGAGTTCTCCCGGACTCAGTACCGTGCCAAGGACAGCGGCGG
GAAGAGCGGCTCTAAGGTTGAACGCATTGAGAAGAGATGTCTGGAGCTATTTGGCCGTGACTACTGTTTC
AGCGTGATTCCAAATGTGAATGGTGATATCTGCGGCCACTACCCCCGCCACATCGTATTCCTGGAGTATG
AGAGTTCTGAGAAAGAGAAAGACACATTTCAGAGCACTGTGCAGGTGAACAAGTTGCAAGACCTCATTCA
CCGAAGCAAGATGGCCAGGTGCAGAGGTCGGTTTGTCTGCCCAGTGATCCTGTTCAAAGGCAAGCATATT
TGCAGGTCGGCCACACTGGCTGGATGGGGAGAGCTATATGGACGCTCGGGATACAACTATTTATTCTCAG
GGGGAGCAGATGATACCTGGGCAAGTACAGAAGATGTCACAGAAGAGGACTTTGTTCTTCGGAGTGGTGA
CACGCACCTTTTTGATAAGGTGAGAGGCTATGATATCAAGCTGCTTCAATACCTGTCAGTCAAGTACATC
TGTGACCTGATGGTGGAGAACAAGAAGGTGAAGTTTGGCATGAATGTAACCTCCTCTGAGAAGGTGGACA
AAGCCCAGCGCTATGCAAACTTCACTCTCCTCTCTATTCCATATCCAGGTTGTGAATTCTTCAAGGAATA
TAAAGATCGGGATTACATGGCTGAAGGGCTCATATTTAACTGGAAGCAGGACTACGTCGATGCCCCATTG
AACATCCCCAACTTCCTGACTCAATCTCTGAACATTGACTGGAGCCAGTATCAGAGTTGGGACCTGGTGC
AACAAACACAGAACTACCTGAAACTGCTGCTTTTCATCATGAACAGAGATGATGACAGCGGGCTGCTGGT
ACACTGTATCTCAGGCTGGGACCGGACCCCCCTCTTCATCTCTCTTCTGCGCCTTTCCTTGTGGGCTGAT
GGGCTAATTCACACATCCCTGAAGCCTGCTGAGATCCTCTACCTGACTGTGGCCTATGACTGGTTCCTCT
TTGGACACATGTTGGTAGATCGGCTCAGCAAAGGGGAGGAGATTTTCTTCTTTTGCTTCAATTTTTTGAA
GCATATCACCTCCGAAGAGTTCTGCCTGAAGACCCAGAGGAGGAAGAGTTTGCCAACTCGGGATGCAGGC
TTCACTGTGGAAGATATCTGCATGTTGAGACACAAAGATCGAGGCAGCACAACCAGCCTAGGCAGCGACT
TCTCCCTGGTCTTGGAGCACTCACCGGGAGCTGTGGGGAGCTTCAGCTATGAGACTGTGGAACTTGCCCC
GGCAGGAGCACCAACTCAGGCAGCTTGGAGGAAGAGTCACTCATCCTCCCCACAGAGTATGCTCTGGAGC
CGGCCACAGCCCTCTGAGGAGCGCCTACCTTCACACCATGGGCTCACTGAAGCCAAGTCTTCTAGCTCTT
CATCCTCAAACCATTCTGACAACTTTTTCAGGATGGGCAGCAGTCCTCTTGAGGTCCCCAAACCCAGATC
AGTGGACCATCCCCTGCCCGGATCCTCTCTCTCCACAGACTTTGGCAGCTGGCAGCTGGTATCGGGCTGT
GGCAGTATTCAGGACCGGCCTGTCCTGCACACAGACTCCTCTCTCCCTTTCAGCTTCCAGGATGAGCTCC
CTAACAGTTGTCTACTTACAGCTCTGAGTGACCGGGAGACAAGGCTGCAGGAGGTGCGGTCTGCCTTCTT
GGCTGCATACAGCAGCACAGTGGGACTTCGAGCAGCAACCCCCAGTCCCTCTGGTGCCATCGGGGGCCTG
CTAGAACAGTTTGCCCGTGGTGTTGGGCTCCGGGGCACAAGCACCAGCACCTTGTGA

Translation (648 aa):
MAGARAAAAASAGSTASSGSPPPQEPGLWELLEEFSRTQYRAKDSGGKSGSKVERIEKRCLELFGRDYCF
SVIPNVNGDICGHYPRHIVFLEYESSEKEKDTFQSTVQVNKLQDLIHRSKMARCRGRFVCPVILFKGKHI
CRSATLAGWGELYGRSGYNYLFSGGADDTWASTEDVTEEDFVLRSGDTHLFDKVRGYDIKLLQYLSVKYI
CDLMVENKKVKFGMNVTSSEKVDKAQRYANFTLLSIPYPGCEFFKEYKDRDYMAEGLIFNWKQDYVDAPL
NIPNFLTQSLNIDWSQYQSWDLVQQTQNYLKLLLFIMNRDDDSGLLVHCISGWDRTPLFISLLRLSLWAD
GLIHTSLKPAEILYLTVAYDWFLFGHMLVDRLSKGEEIFFFCFNFLKHITSEEFCLKTQRRKSLPTRDAG
FTVEDICMLRHKDRGSTTSLGSDFSLVLEHSPGAVGSFSYETVELAPAGAPTQAAWRKSHSSSPQSMLWS
RPQPSEERLPSHHGLTEAKSSSSSSSNHSDNFFRMGSSPLEVPKPRSVDHPLPGSSLSTDFGSWQLVSGC
GSIQDRPVLHTDSSLPFSFQDELPNSCLLTALSDRETRLQEVRSAFLAAYSSTVGLRAATPSPSGAIGGL
LEQFARGVGLRGTSTSTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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