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Report for CCDS20410.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20410.1 Public Mus musculus 6 Thumpd3 23 108 98 CCDS HistoryNCBI Gene:14911Re-query CCDS DB by CCDS ID:20410.1Re-query CCDS DB by GeneID:14911See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20410.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032398.14 ENSMUSP00000032398.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032398.14Link to Ensembl Protein Viewer:ENSMUSP00000032398.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000032398Re-query CCDS DB by Protein ID:ENSMUSP00000032398
Original member NCBI NM_001355266.1 NP_001342195.1 Updated not alive Link to Nucleotide Sequence:NM_001355266.1Link to Protein Sequence:NP_001342195.1Re-query CCDS DB by Nucleotide ID:NM_001355266Re-query CCDS DB by Protein ID:NP_001342195
Current member NCBI NM_001355266.2 NP_001342195.1 Accepted alive Link to Nucleotide Sequence:NM_001355266.2Link to Protein Sequence:NP_001342195.1Re-query CCDS DB by Nucleotide ID:NM_001355266Re-query CCDS DB by Protein ID:NP_001342195Link to BLAST:NP_001342195.1
Original member NCBI NM_008188.3 NP_032214.1 Updated not alive Link to Nucleotide Sequence:NM_008188.3Link to Protein Sequence:NP_032214.1Re-query CCDS DB by Nucleotide ID:NM_008188Re-query CCDS DB by Protein ID:NP_032214
Current member NCBI NM_008188.4 NP_032214.1 Accepted alive Link to Nucleotide Sequence:NM_008188.4Link to Protein Sequence:NP_032214.1Re-query CCDS DB by Nucleotide ID:NM_008188Re-query CCDS DB by Protein ID:NP_032214Link to BLAST:NP_032214.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342195.1 505 P97770-1 505 100% 0 0
NP_032214.1 505 P97770-1 505 100% 0 0

Chromosomal Locations for CCDS 20410.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 113047447 113047704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113049339 113049416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113055639 113056115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113059955 113060085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113063101 113063170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113065544 113065659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113066756 113066866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113067268 113067391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113067674 113067826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1518 nt):
ATGTCTTGTGACACTCAAGAAGCTACCAGAGAGTGCCTGGGTATGAACCTTGATGGCAACAAAGAGCCTG
TGTCGCTGGTAGAAAGCGGCGTCAGAAGTGAGTCGGAGCATCTCCAAGTCACTATTGGAGCCACTGTACC
CACTGGCTTTGAACAAACGGCTGCGGGGGAAGTGAGAGAGAAACTGAAGTCGGCCTGCAGAATCAGCAAA
GACCGCGGAAAGATCTATTTTGATATTGCAGTGGAAAGTCTGGCTCAGGTTCATTGTCTGAGATCAGTTG
ATAACTTGTTTGTGGTTGTTCAGGAGTTTAAAGATTACCAGTTCAAAGATACGAAGGAAGAAGTTCTAAG
AGACTTTGAAGAACTGGCTGGAAAACTCCCATGGTCAGACCCTTTAAAAGTCTGGCAAATTAACACCACT
TTCAAGAAGAAGAAAGCAAAGCGCAGAAAGGCAAATCAGAGTGCAGGTAAAGAGAAGGCTGACTGTGGAC
AAGGAGACAAAGCAGATGAGAAAGATGGTAAGAAAAAGCATGCCAGCAGCACTTCAGATTCACATATCTT
GGACTATTATGAAAATCCAGCCATCAAAGAAGAGATATCAACCTTAGTAGGTGATGTCTTGTCGTCTTGC
AAAGATGAAACTGGTCAAAGCTTAAGAGAAGAAACTGAACCACAGGTACAGAAGTTTAGAGTCACCTGCA
ACAGAGCAGGAGAGAAACATTGCTTTACCTCCAATGAGGCTGCGAGAGATTTTGGGGGTGCTATTCAAGA
GTACTTTAAGTGGAAGGCTGATATGACCAACTTTGATGTAGAGGTTCTCCTGAACATCCATGATAATGAA
GTCATTGTTGCTATTGCACTGACAGAAGAGAGTCTCCATCGCAGAAATATTACACATTTTGGACCTACAA
CTCTTAGGTCAACTCTTGCCTATGGGATGCTCAGGCTCTGTGAACCTAAGCCTACTGATGTAATAGTGGA
CCCAATGTGTGGAACAGGGGCAATACCAATAGAGGGGGCTACTGAGTGGTCTCACTGTTACCATATTGCT
GGGGACAATAACCCACTGGCAGTGAACAGAGCAGCAAATAACATCTCATCTCTATTGACTAAGAGCCAGA
TTAAAGATGGAAAAACAACCTGGGGTTTGCCCATTGATGCTGTTCAGTGGGATATCTGCAACCTCCCACT
GAGAACTGCTTCTGTGGATATTATTGTAACAGATATGCCATTTGGAAAAAGGATGGGATCCAAGAAGAGA
AATTGGAATCTCTATCCAGCTTGCCTTCGGGAAATGAGCCGTGTCTGTAGACCAGGGACAGGCAGAGCTG
TACTGCTTACTCAGGACAAGAAATGTTTTACCAAGGCCTTATCTGGAATGGGACATGTGTGGCGAAAGGT
CCATGTAGTCTGGGTGAACATCGGGGGCCTTCATGCTGCAGTTTATCTTCTAAAGCGCACTGCTCAAGCC
TTTGTTCATCCTTCAGATCAAGATGAAGGAAGAGACCCTCCTTGGTAA

Translation (505 aa):
MSCDTQEATRECLGMNLDGNKEPVSLVESGVRSESEHLQVTIGATVPTGFEQTAAGEVREKLKSACRISK
DRGKIYFDIAVESLAQVHCLRSVDNLFVVVQEFKDYQFKDTKEEVLRDFEELAGKLPWSDPLKVWQINTT
FKKKKAKRRKANQSAGKEKADCGQGDKADEKDGKKKHASSTSDSHILDYYENPAIKEEISTLVGDVLSSC
KDETGQSLREETEPQVQKFRVTCNRAGEKHCFTSNEAARDFGGAIQEYFKWKADMTNFDVEVLLNIHDNE
VIVAIALTEESLHRRNITHFGPTTLRSTLAYGMLRLCEPKPTDVIVDPMCGTGAIPIEGATEWSHCYHIA
GDNNPLAVNRAANNISSLLTKSQIKDGKTTWGLPIDAVQWDICNLPLRTASVDIIVTDMPFGKRMGSKKR
NWNLYPACLREMSRVCRPGTGRAVLLTQDKKCFTKALSGMGHVWRKVHVVWVNIGGLHAAVYLLKRTAQA
FVHPSDQDEGRDPPW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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