NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20379.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20379.1 Public Mus musculus 6 Slc25a26 23 108 98 CCDS HistoryNCBI Gene:67582Re-query CCDS DB by CCDS ID:20379.1Re-query CCDS DB by GeneID:67582See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20379.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061118.10 ENSMUSP00000058028.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061118.10Link to Ensembl Protein Viewer:ENSMUSP00000058028.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000061118Re-query CCDS DB by Protein ID:ENSMUSP00000058028
Original member Current member NCBI NM_026255.5 NP_080531.2 Accepted alive Link to Nucleotide Sequence:NM_026255.5Link to Protein Sequence:NP_080531.2Re-query CCDS DB by Nucleotide ID:NM_026255Re-query CCDS DB by Protein ID:NP_080531Link to BLAST:NP_080531.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080531.2 274 Q5U680 274 100% 0 0

Chromosomal Locations for CCDS 20379.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 94500425 94500457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 94507514 94507670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 94510752 94510861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 94534144 94534248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 94535721 94535768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 94576334 94576378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 94592412 94592481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 94598380 94598444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 94599179 94599252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 94603552 94603669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (825 nt):
ATGGACGCGCCGGGCTTCACGGCCTCGCTGGTGGCTGGAGGGGTAGCAGGCGTCTCTGTGGACTTGATAT
TATTTCCTCTGGACACCATTAAGACAAGGCTGCAGAGTCCCCAGGGATTTAACAAGGCTGGTGGATTTCG
TGGGATATATGCTGGGGTCCCTTCTGCAGCTGTTGGATCCTTTCCTAACGCTGCTGCATTTTTTCTCACC
TATGAATATGTGAAATCTTTGCTGCACACGGACTCTACTTCACACTTCAAACCCGTGAAGCACATGCTGG
CTGCCTCTACAGGAGAAGTGGTGGCCTGCTTGATTCGAGTTCCTTCTGAAGTGGTTAAGCAGAGGGCACA
GGTGTCTGCTTCTTCAAAGACCTTGCAGATCTTTTTGACTATCTTAAGTGAAGAGGGCATTCAAGGACTG
TACCGAGGCTATAAAAGCACAGTTTTAAGAGAGATTCCTTTCTCCTTGGTCCAGTTTCCCTTGTGGGAAT
CCTTGAAAGCCCTCTGGGCGTGGCGGCGGGGTCATGTGGTGGATTCTTGGCAGTCAGCAGTCTGCGGAGC
TTTTGCAGGTGGCTTTGCAGCTGCAGTGACTACACCTCTGGACGTGGCTAAGACAAGGATCATGCTGGCA
AAGGCGGGTTCCAGCACTGCTGTGGGGAACGTGCTCTCTGCCATGCACGGGGTGTGGCGCTCACAGGGAC
TAGCCGGGTTATTCGCAGGTGTCCTCCCGAGGATGGCAGCAATCAGCATGGGCGGCTTCATCTTTCTGGG
CGCCTATGACCAGGCGCGAAGCTTGCTGTTAGAGGTGGGCAGGAAGAGCCCATGA

Translation (274 aa):
MDAPGFTASLVAGGVAGVSVDLILFPLDTIKTRLQSPQGFNKAGGFRGIYAGVPSAAVGSFPNAAAFFLT
YEYVKSLLHTDSTSHFKPVKHMLAASTGEVVACLIRVPSEVVKQRAQVSASSKTLQIFLTILSEEGIQGL
YRGYKSTVLREIPFSLVQFPLWESLKALWAWRRGHVVDSWQSAVCGAFAGGFAAAVTTPLDVAKTRIMLA
KAGSSTAVGNVLSAMHGVWRSQGLAGLFAGVLPRMAAISMGGFIFLGAYDQARSLLLEVGRKSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH