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Report for CCDS20312.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20312.1 Public Mus musculus 6 Tia1 23 108 98 CCDS HistoryNCBI Gene:21841Re-query CCDS DB by CCDS ID:20312.1Re-query CCDS DB by GeneID:21841See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20312.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095753.8 ENSMUSP00000093425.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095753.8Link to Ensembl Protein Viewer:ENSMUSP00000093425.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000095753Re-query CCDS DB by Protein ID:ENSMUSP00000093425
Original member Current member NCBI NM_011585.4 NP_035715.1 Accepted alive Link to Nucleotide Sequence:NM_011585.4Link to Protein Sequence:NP_035715.1Re-query CCDS DB by Nucleotide ID:NM_011585Re-query CCDS DB by Protein ID:NP_035715Link to BLAST:NP_035715.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035715.1 386 P52912 386 100% 0 0

Chromosomal Locations for CCDS 20312.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 86404497 86404522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86413804 86413900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86416303 86416401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86418878 86418932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86419101 86419133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86420324 86420411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86424345 86424420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86424962 86425070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86425450 86425545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86425661 86425745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86426567 86426690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86427673 86427818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86430241 86430367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1161 nt):
ATGGAGGACGAGATGCCCAAGACTCTATACGTCGGTAACCTTTCTCGAGATGTGACAGAAGCTCTCATCC
TCCAGCTCTTTAGCCAGATTGGACCTTGTAAAAACTGCAAAATGATTATGGATACAGCAGGAAATGACCC
ATACTGTTTTGTGGAGTTCCATGAGCACCGTCATGCAGCTGCAGCCCTGGCTGCCATGAATGGGCGGAAG
ATAATGGGTAAGGAAGTGAAAGTGAATTGGGCAACAACCCCTAGCAGTCAAAAGAAGGATACGAGCAGTA
GTACCGTTGTCAGCACACAGCGTTCACAAGATCATTTCCATGTGTTTGTTGGTGACCTCAGTCCAGAAAT
CACAACCGAAGACATCAAAGCAGCGTTTGCACCATTTGGAAGAATTTCAGATGCCCGTGTGGTAAAAGAC
ATGGCTACCGGGAAGTCTAAGGGATATGGCTTTGTCTCCTTTTTCAACAAATGGGATGCAGAAAATGCCA
TTCAGCAGATGGGTGGCCAGTGGCTTGGTGGAAGACAAATCAGAACTAACTGGGCAACCCGAAAGCCTCC
AGCTCCAAAGAGTACATATGAGTCGAACACCAAACAGCTGTCATATGATGAGGTTGTGAGTCAGTCTAGT
CCCAACAACTGCACTGTGTACTGTGGAGGGGTGACGTCAGGACTGACAGAACAACTAATGCGTCAGACTT
TTTCTCCATTTGGACAAATAATGGAAATTCGAGTCTTCCCAGATAAAGGATACTCATTTGTTCGGTTCAG
TTCCCATGAAAGTGCAGCACATGCGATTGTTTCTGTTAATGGTACTACCATTGAAGGGCATGTGGTGAAA
TGTTATTGGGGCAAAGAGACTCTTGATATGATAAACCCTGTGCAACAGCAAAATCAAATTGGATATCCAC
CAACATATGGCCAGTGGGGCCAGTGGTATGGAAATGCACAACAGATTGGCCAGTATGTGCCTAACGGTTG
GCAAGTACCTGCCTATGGAGTGTATGGCCAGCCATGGAGCCAGCAGGGGTTCAATCAGACCCAGTCTTCT
GCACCGTGGATGGGACCCAATTACAGTGTGCCACCACCTCAAGGGCAGAATGGCAGCATGTTGCCTAGTC
AGCCTGCTGGGTATCGAGTGGCCGGGTATGAAACCCAGTGA

Translation (386 aa):
MEDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRK
IMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKD
MATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSS
PNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVK
CYWGKETLDMINPVQQQNQIGYPPTYGQWGQWYGNAQQIGQYVPNGWQVPAYGVYGQPWSQQGFNQTQSS
APWMGPNYSVPPPQGQNGSMLPSQPAGYRVAGYETQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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