NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20274.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20274.1 Public Mus musculus 6 Rtkn 23 108 98 CCDS HistoryNCBI Gene:20166Re-query CCDS DB by CCDS ID:20274.1Re-query CCDS DB by GeneID:20166See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20274.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087938.10 ENSMUSP00000085249.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087938.10Link to Ensembl Protein Viewer:ENSMUSP00000085249.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000087938Re-query CCDS DB by Protein ID:ENSMUSP00000085249
Original member Current member EBI ENSMUST00000121093.7 ENSMUSP00000112501.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121093.7Link to Ensembl Protein Viewer:ENSMUSP00000112501.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121093Re-query CCDS DB by Protein ID:ENSMUSP00000112501
Original member NCBI NM_009106.2 NP_033132.2 Updated not alive Link to Nucleotide Sequence:NM_009106.2Link to Protein Sequence:NP_033132.2Re-query CCDS DB by Nucleotide ID:NM_009106Re-query CCDS DB by Protein ID:NP_033132
Current member NCBI NM_009106.3 NP_033132.2 Accepted alive Link to Nucleotide Sequence:NM_009106.3Link to Protein Sequence:NP_033132.2Re-query CCDS DB by Nucleotide ID:NM_009106Re-query CCDS DB by Protein ID:NP_033132Link to BLAST:NP_033132.2
Original member NCBI NM_133641.2 NP_598396.2 Updated not alive Link to Nucleotide Sequence:NM_133641.2Link to Protein Sequence:NP_598396.2Re-query CCDS DB by Nucleotide ID:NM_133641Re-query CCDS DB by Protein ID:NP_598396
Current member NCBI NM_133641.3 NP_598396.2 Accepted alive Link to Nucleotide Sequence:NM_133641.3Link to Protein Sequence:NP_598396.2Re-query CCDS DB by Nucleotide ID:NM_133641Re-query CCDS DB by Protein ID:NP_598396Link to BLAST:NP_598396.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033132.2 551 Q8C6B2-2 551 100% 0 0
NP_598396.2 551 Q8C6B2-2 551 100% 0 0

Chromosomal Locations for CCDS 20274.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 83138175 83138246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83145931 83146130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83147489 83147550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83147652 83147705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83147828 83147945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83148106 83148315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83149464 83149558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83149672 83149778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83149972 83150100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83150908 83151076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83151237 83151341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83151886 83152220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1656 nt):
ATGCAGGACAGATTGCGCATCCTGGAGGACCTCAATATGCTCTACATCCGGCAGATGGCACTCAGCCTGG
AGGACACAGAGCTGCAGAGGAAACTAGATCATGAGATCCGGATGAGGGATGGGGCCTGCAAGCTGCTGGC
AGCCTGCTCCCAGCGAGAGCAGGCTCTGGAAGCCACCAAGAGCCTGCTGGTGTGCAACAGCCGTATTCTC
AGCTACATGGGTGAGCTGCAGCGGCGAAAGGAGGCCCAGGTGCTGGAGAAGACAGGCAGGCGACCTTCGG
ACAGTGTGCAGCCTGCTCAGCACTCCCCTTGCCGTGGCCGGGTCTGCATCTCTGACCTCCGGATCCCACT
CATGTGGAAGGATACAGAGTATTTCAAGAACAAAGGCGACCTGCACCGCTGGGCTGTGTTCCTGCTGCTG
CAGATTGGGGAACAGATTCAGGACACAGAGATGGTCCTGGTAGACAGGACCCTCACAGACATCTCCTTTC
AGAATAATGTGCTTTTTGCTGAGGCAGAGCCTGACTTTGAACTGCGGCTGGAGCTGTATGGGGCCTGTGT
GGAAGAGGAGGGAGCCCTGGCTGGTGCTCCCAAGAGGCTTGCCACCAAACTCAGTAGCTCCCTGGGCCGT
TCCTCGGGGAAGAGAGTCAGGGCATCGCTGGACAGTGCTGGGGCCTCCGGGAACAGTCCCGTCCTGTTAC
CTACCCCAGCTGTGGGAGGTCCTCGATTCCACCTCTTGGCCCACACCACTCTTACCCTAGAAGAAGTGCA
AGATGGATTCCGTACACATGACCTCACGCTCACCAGTCATGAGGAGAACCCTGCCTGGCTACCCCTTTAT
GGCAGCGTGTGTTGCCGCCTGGCAGCTCAGCCTCTCTGCATGATCCAGCCCACTGCAAGTGGTGCCCTTA
GGGTGCAGCAAGCCGGGGAGCTGCAGAATGGGACACTGGTACATGGAGTCCTGAAAGGCACAAACCTCTT
TTGTTACTGGAGATCTGAGGATGCAGACACTGGGCAAGAACCACTGTTCACTATCGTCATCAACAAGGAG
ACTAGGGTCCGGGCAGGTGAGTTGGAGCAGGCCCCAGAGTGGCCTTTCACCCTCAGCATCAGCAACAAGT
ATGGGGATGATGAGGTGACAAACACCCTCCAGCTGGAGAGCAGAGAAGCCCTGCAGAACTGGATGGAGGC
GCTTTGGCAGCTCTTCTTTGACATGAGCCAGTGGAGGCACTGTTGTGATGAAGTCATGAAGATCGAAACT
CCTGCGCCCCGGAAACCACCCCAAGCCCTGGCCAAGCAGGGGTCCTTATACCACGAGATGGCCATTGAGC
CGCTAGACGACATCGCAGCTGTGACAGACATCCTGGCCCAGCGGGAGGGCACAAGGCTGGAGCCATCCCC
ACCCTGGCTAGCAATGTTTACAGACCAGCCTGCCTTGCCTAGCTCCTGCTCGCCTGCCTCAGTGGCCCCA
GTCCCAACCTGGATGCAACCCCTGCCCTGGGGAAGACCCCGAACCTTTTCCCTGGATGCTGCCCCTGCAG
ACCACTCCCTTGGGCCTTCTCGCTCGGTTGCACCCCTTCCCCCGCAGAGATCCCCCAAATCCAGAGGTTT
CTACAGCAAAAGCCAGCTCGGCCCATGGCTCCAGTCCCCAGTGTGA

Translation (551 aa):
MQDRLRILEDLNMLYIRQMALSLEDTELQRKLDHEIRMRDGACKLLAACSQREQALEATKSLLVCNSRIL
SYMGELQRRKEAQVLEKTGRRPSDSVQPAQHSPCRGRVCISDLRIPLMWKDTEYFKNKGDLHRWAVFLLL
QIGEQIQDTEMVLVDRTLTDISFQNNVLFAEAEPDFELRLELYGACVEEEGALAGAPKRLATKLSSSLGR
SSGKRVRASLDSAGASGNSPVLLPTPAVGGPRFHLLAHTTLTLEEVQDGFRTHDLTLTSHEENPAWLPLY
GSVCCRLAAQPLCMIQPTASGALRVQQAGELQNGTLVHGVLKGTNLFCYWRSEDADTGQEPLFTIVINKE
TRVRAGELEQAPEWPFTLSISNKYGDDEVTNTLQLESREALQNWMEALWQLFFDMSQWRHCCDEVMKIET
PAPRKPPQALAKQGSLYHEMAIEPLDDIAAVTDILAQREGTRLEPSPPWLAMFTDQPALPSSCSPASVAP
VPTWMQPLPWGRPRTFSLDAAPADHSLGPSRSVAPLPPQRSPKSRGFYSKSQLGPWLQSPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH