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Report for CCDS20133.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20133.1 Public Mus musculus 6 Npvf 23 108 98 CCDS HistoryNCBI Gene:60531Re-query CCDS DB by CCDS ID:20133.1Re-query CCDS DB by GeneID:60531See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20133.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031853.7 ENSMUSP00000031853.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031853.7Link to Ensembl Protein Viewer:ENSMUSP00000031853.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000031853Re-query CCDS DB by Protein ID:ENSMUSP00000031853
Original member Current member NCBI NM_021892.2 NP_068692.1 Accepted alive Link to Nucleotide Sequence:NM_021892.2Link to Protein Sequence:NP_068692.1Re-query CCDS DB by Nucleotide ID:NM_021892Re-query CCDS DB by Protein ID:NP_068692Link to BLAST:NP_068692.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_068692.1 188 Q9ESQ8-1 188 100% 0 0

Chromosomal Locations for CCDS 20133.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 50650871 50650922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50652494 50652870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50654256 50654393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (567 nt):
ATGGAAATTATTTCATTAAAACGATTCATTTTATTGACTGTGGCAACTTCAAGCTTCTTAACATCAAACA
CCTTCTGTACAGATGAGTTCATGATGCCTCATTTTCACAGCAAAGAAGGTGACGGAAAATACTCCCAGCT
GAGAGGAATCCCAAAAGGGGAAAAGGAAAGAAGTGTCAGTTTTCAAGAACTAAAAGATTGGGGGGCAAAG
AATGTTATTAAGATGAGTCCAGCCCCTGCCAACAAAGTGCCCCACTCAGCAGCCAACCTGCCCCTGAGAT
TTGGAAGGACCATAGATGAGAAAAGAAGCCCCGCAGCACGGGTCAACATGGAGGCAGGGACCAGGAGCCA
TTTCCCCAGCCTGCCCCAAAGGTTTGGGAGAACAACAGCCAGAAGCCCCAAGACACCCGCTGATTTGCCA
CAGAAACCCCTGCACTCACTGGGCTCCAGCGAGTTGCTCTACGTCATGATCTGCCAGCACCAAGAAATTC
AGAGTCCTGGTGGAAAGCGAACGAGGAGAGGAGCGTTTGTGGAAACAGATGATGCAGAAAGGAAACCAGA
AAAATAG

Translation (188 aa):
MEIISLKRFILLTVATSSFLTSNTFCTDEFMMPHFHSKEGDGKYSQLRGIPKGEKERSVSFQELKDWGAK
NVIKMSPAPANKVPHSAANLPLRFGRTIDEKRSPAARVNMEAGTRSHFPSLPQRFGRTTARSPKTPADLP
QKPLHSLGSSELLYVMICQHQEIQSPGGKRTRRGAFVETDDAERKPEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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