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Report for CCDS20130.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20130.1 Public Mus musculus 6 Gsdme 23 108 98 CCDS HistoryNCBI Gene:54722Re-query CCDS DB by CCDS ID:20130.1Re-query CCDS DB by GeneID:54722See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20130.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031845.12 ENSMUSP00000031845.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031845.12Link to Ensembl Protein Viewer:ENSMUSP00000031845.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000031845Re-query CCDS DB by Protein ID:ENSMUSP00000031845
Original member Current member EBI ENSMUST00000170142.7 ENSMUSP00000126759.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170142.7Link to Ensembl Protein Viewer:ENSMUSP00000126759.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170142Re-query CCDS DB by Protein ID:ENSMUSP00000126759
Original member Current member NCBI NM_018769.4 NP_061239.1 Accepted alive Link to Nucleotide Sequence:NM_018769.4Link to Protein Sequence:NP_061239.1Re-query CCDS DB by Nucleotide ID:NM_018769Re-query CCDS DB by Protein ID:NP_061239Link to BLAST:NP_061239.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061239.1 512 Q9Z2D3 512 100% 0 0

Chromosomal Locations for CCDS 20130.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 50207934 50208206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50216350 50216423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50219237 50219438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50220989 50221116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50222736 50222900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50227279 50227399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50229286 50229457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50245930 50246122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50251276 50251486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1539 nt):
ATGTTTGCCAAAGCAACTCGAAATTTTCTTAAAGAAGTTGATGCTGGAGGAGACCTGATTTCAGTCTCAC
ACTTGAACGACTCTGACAAGCTGCAACTTCTAAGTCTGGTGACCAAAAAGAAGAGATACTGGTGCTGGCA
GAGACCCAAGTACCAGATTTTATCTGCCACCCTGGAAGATGTACTCACAGAAGGGCACTGTCTCAGTCCA
GTGGTTGTGGAGTCAGACTTCGTGAAATACGAGAGCAAGTGTGAGAACCATAAGAGCGGGGCTATTGGGA
CAGTCGTGGGGAAGGTCAAGCTGAACGTTGGTGGCAAAGGCGTGGTGGAGAGTCACTCTTCGTTTGGAAC
CCTGAGGAAGCAGGAGGTGGACGTGCAGCAGCTCATCCAGGATGCCGTCAAGAGAACAGTTAATATGGAC
AACCTGGTACTTCAGCAGGTGCTAGAGAGCAGGAACGAGGTCCTGTGTGTGCTGACGCAGAAGATCATGA
CCACGCAGAAGTGCGTGATTTCTGAGCATGTGCAGTCGGAGGAGACGTGTGGAGGCATGGTGGGGATCCA
GACCAAGACTATACAGGTGTCAGCAACGGAGGATGGGACGGTCACCACGGACACCAATGTAGTGCTGGAG
ATCCCTGCTGCCACCACCATTGCCTATGGCATCATGGAGCTGTTTGTGAAACAAGATGGCCAGTTTGAAT
TCTGCCTCCTCCAAGGGAAACATGGTGGCTTCGAGCATGAGAGGAAACTAGACTCTGTCTACTTGGACCC
CCTGGCCTACAGAGAGTTCGCCTTTCTGGACATGCTGGATGGGGGTCAAGGGATCTCTTCGCAGGACGGG
CCCCTACGAGTTGTAAAACAAGCAACCCTGCACCTAGAGAGGAGTTTCCATCCCTTTGCGGTGTTACCTG
CCCAGCAGCAGAGGGCGCTGTTCTGTGTCCTGCAGAAAATCCTGTTTGATGAAGAACTCCTTCGGGCCCT
GGAGCAAGTGTGTGATGATGTGGCTGGTGGTCTCTGGTCCTCACAGGCTGTATTGGCAATGGAGGAGCTG
ACCGACAGTCAGCAGCAGGACCTCACAGCCTTCTTGCAGCTGGTGGGATACAGGATACAAGGAGAGCATC
CTGGCCCACAGGATGAGGTCAGCAACCAGAAGCTCTTTGCAACAGCCTACTTCCTGGTCAGCGCACTAGC
AGAAATGCCTGATAATGCCACAGTTTTCCTGGGGACTTGCTGCAAACTCCATGTTATTTCTTCGCTGTGC
TGCTTGCTCCATGCTCTGTCTGATGACAGCGTGTGTGATTTTCACAACCCCACCTTGGCTCCTCTGAGAG
ACACAGAGAGGTTTGGCATCGTGCAGCGATTGTTTGCCTCTGCTGACATTGCCCTGGAGAGGATGCAGTT
TTCTGCGAAAGCCACCATCCTGAAGGACTCTTGCATCTTCCCGCTAATTCTTCACATCACTCTAAGTGGG
CTCAGCACTCTAAGCAAAGAGCATGAGGAAGAGCTTTGTCAGTCAGGACATGCTACAGGTCAAGACTAG

Translation (512 aa):
MFAKATRNFLKEVDAGGDLISVSHLNDSDKLQLLSLVTKKKRYWCWQRPKYQILSATLEDVLTEGHCLSP
VVVESDFVKYESKCENHKSGAIGTVVGKVKLNVGGKGVVESHSSFGTLRKQEVDVQQLIQDAVKRTVNMD
NLVLQQVLESRNEVLCVLTQKIMTTQKCVISEHVQSEETCGGMVGIQTKTIQVSATEDGTVTTDTNVVLE
IPAATTIAYGIMELFVKQDGQFEFCLLQGKHGGFEHERKLDSVYLDPLAYREFAFLDMLDGGQGISSQDG
PLRVVKQATLHLERSFHPFAVLPAQQQRALFCVLQKILFDEELLRALEQVCDDVAGGLWSSQAVLAMEEL
TDSQQQDLTAFLQLVGYRIQGEHPGPQDEVSNQKLFATAYFLVSALAEMPDNATVFLGTCCKLHVISSLC
CLLHALSDDSVCDFHNPTLAPLRDTERFGIVQRLFASADIALERMQFSAKATILKDSCIFPLILHITLSG
LSTLSKEHEEELCQSGHATGQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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