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Report for CCDS20060.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20060.1 Public Mus musculus 6 Sva 23 108 98 CCDS HistoryNCBI Gene:20939Re-query CCDS DB by CCDS ID:20060.1Re-query CCDS DB by GeneID:20939See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 20060.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024059.4 ENSMUSP00000024059.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024059.4Link to Ensembl Protein Viewer:ENSMUSP00000024059.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000024059Re-query CCDS DB by Protein ID:ENSMUSP00000024059
Original member Current member NCBI NM_009299.2 NP_033325.2 Accepted alive Link to Nucleotide Sequence:NM_009299.2Link to Protein Sequence:NP_033325.2Re-query CCDS DB by Nucleotide ID:NM_009299Re-query CCDS DB by Protein ID:NP_033325Link to BLAST:NP_033325.2

Chromosomal Locations for CCDS 20060.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 42038422 42038516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42040077 42040212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42042150 42042261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42042572 42042705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (477 nt):
ATGGCTTCTCTTCAAAAGTTCTATCAACCTGGAGCAGTCATATATCTCCTTATTGTATTCTTACTTCAGG
AGACTGCTGGGTTTTGGTACCATGGCTTACACAATGAACCCCGTAACTACACACTCACACTGAATATGAA
AATCACTCCAAGTACTAGCATTACTAACAAAAAAGGGAATGAATTTCGAGTACAACTGACAGTTAAAAAC
AACGTGAAGCAATGCCAGGAGGTAGAAATAAATACTGAACATGAGAGATACATCAAGTTCCTTTCTGGTC
CATCAACTTTTGAAACTTGCATATGTACCATTAGCGATTTCTTCTGGGATATATATGTCTCTGAAAGCAC
TTACCTAACACTATCAGCCTCCATTCTGCCATATAAGAACAAATGTCCTGACTCTGACGAACCACTACTA
TATGGCGACTCTTACCAAATGTACAATATTACAGATAAAATCAATGTAACACCATAA

Translation (158 aa):
MASLQKFYQPGAVIYLLIVFLLQETAGFWYHGLHNEPRNYTLTLNMKITPSTSITNKKGNEFRVQLTVKN
NVKQCQEVEINTEHERYIKFLSGPSTFETCICTISDFFWDIYVSESTYLTLSASILPYKNKCPDSDEPLL
YGDSYQMYNITDKINVTP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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