CCDS Report for Consensus CDS

PubMed

Entrez

Gene

BLAST

OMIM

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Genome Displays

	Ensembl
	NCBI
	UCSC
	VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19987.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
19987.1	Public	Mus musculus	6	Exoc4	23	108	98

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19987.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000052266.14	ENSMUSP00000051965.8	Accepted	alive
		NCBI	NM_009148.4	NP_033174.2	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_033174.2	975	O35382	975	100%	0	0

Chromosomal Locations for CCDS 19987.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)

Genome Browser links:

Chromosome	Start	Stop
6	33249153	33249238
6	33265940	33266129
6	33277187	33277381
6	33296733	33296917
6	33305285	33305394
6	33332211	33332454
6	33347783	33347957
6	33438380	33438525
6	33441951	33442039
6	33579982	33580078
6	33757967	33758186
6	33815674	33815810
6	33838975	33839130
6	33862061	33862239
6	33910488	33910629
6	33918401	33918579
6	33921378	33921537
6	33971914	33972151

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2928 nt):
ATGGCGGCAGAAGCAGCTGGTGGGAAATACAGGAGCACAGTCAGCAAAAGCAAAGACCCCTCGGGGCTGC TCATCTCGGTGATCAGGACTCTGTCTACCAGTGATGATGTTGAAGACCGAGAAAATGAGAAAGGTCGCCT TGAAGAAGCCTATGAGAAGTGTGACCGTGACCTGGATGAATTGATCGTTCAGCACTACACAGAATTGACC ACAGCCATTCGCACATACCAGAGTATCACAGAACGCATCACTAACTCGAGGAATAAAATCAAGCAGGTCA AAGAGAATCTGCTTTCCTGCAAGATGCTGCTGCATTGCAAACGGGATGAGCTTCGTAAGCTGTGGATTGA AGGAATCGAGCATAAGCACGTCCTGAACCTACTGGATGAGATTGAGAACATCAAGCAAGTGCCTCAAAAG CTGGAACAGTGCATGGCCAGCAAGCACTACCTCAGCGCCACCGACATGCTGGTGTCAGCAGTGGAGTCCC TGGAGGGTCCACTGCTCCAGGTGGAAGGGCTCAGTGATCTCAGGCTGGAACTTCACAGCAAGAAGATGAA CCTGCACTTGGTTCTCATAGAGGAACTGCACCGCCATCTGTATATCAAATCCACTAGCCGGGTGGTACAG CGTAACAAGGAAAAGGGGAAGATGAGTTCTCATGGCAAAGATCCCTCTCCTGGTCCTCTGATTGATGTTT CAAACATCCCTACTCCACGCAAATTCCTTGATGCTTCTCAATATTCTGCTGCTGGAGGCTCAAGTGTGAG GGAGATGAACCTGCAAGACGTCAAGGAGGACTTGGAGTGTGACCCAGAGGAGAACAGCACTCTTTTCATG GGAATTCTTATTCAGGGCCTGGCCAGACTGAAGAAGATCCCTGAGACAGTTAAAGCCATTAAAGAGCGTC TGGAGCAGGAGCTAAAGCAGATTGTGAAGAGGTCAACCACCCAGGTAGCAGACAGTGCTTATCAGAGGGG AGAGAGCCTCACTGTGGACAATCAGCCAAGGTTACTCCTAGAACTGCTGGAACTGTTGTTTGATAAGTTT AATGCCGTAGCCACTGCACACTCAGTGGTCCTGGGGTACCTCCAGGACTCTGTTGGGACCCAGCTAACAC AGCAGGAGGAGATCAAATTATATGACATGGCAGATGTGTGGGTGAAGATCCAGGATGTGCTGCAGATGCT GTTGACTGAGTACTTGGATATGAAGAACACACGCACCGCCTCAGAGCCATCAGCCCAACTAAGCTATGCC AGTACTGGACGAGAGTTCGCAGCCTTTTTTGCCAAGAAGAAACCACAGAGGCCAAAGAATTCTCTTTTCA AGTTTGAATCATCCTCCCATGCTATCAGCATGAGCGCCTATCTCCGAGAACAAAGAAGGGAGCTCTACAG TCGGAGTGGAGAACTCCAGGGAGGTCCTGATGACAACTTAATTGAAGGTGGAGGAACAAAATTTGTCTGC AAACCTGGAGCCAGAAATATTACCGTCATATTCCATCCATTACTGAGATTTATTCAGGAGATTGAACATG CCCTGGGACTTGGCCCTGCCAAACAGTGTCCTCTTCGAGAGTTTCTTACCGTGTATATCAAGAGCATCTT CCTTAATCAGGTCTTGGCTGAGATCAACAAGGAGATTGAAGGCGTCACCAAAACCTCAGACCCCTTGAAG ATCCTGGCTAATGCAGACACCATGAAGGTTCTGGGAGTGCAGCGGCCTCTTCTACAGAGCACAATCATCG TGGAGAAGACAGTACAAGACCTCATGAACCTTATGCATGACTTGAGTGCGTATTCAGATCAGTTCCTCAA CATGGTGTGTGTGAAGCTCCAGGAGTACAAGGACACGTGCTCCACAGCCTACAGGGGCATTGTCCAGTCA GAAGAGAAACTTGTCATCAGTGCTTCTTGGGCAAAGGATGATGATATCAGCAGACTCTTGAAATCGCTGC CAAACTGGACTAACATGGCTCAGCCCAAACAGCTAAGGCCTAAGAGGGAGGAGGAAGAAGACTTCATAAG GGCAGCCTTTGGCAAGGAGTCTGAAGTCCTGATTGGAAACCTTGGTGACAAACTCATTCCTCCACAAGAC ATTCTCCGTGACGTTAGTGACCTCAAAGCCTTGGCCAACATGCACGAAAGCCTGGAATGGCTGGCAGGTC GAACAAAGTCAGCTTTCTCCAACCTTTCTACATCCCAGATGCTTTCCCCTGCTCAAGAGAGCCACGTGAA CATGGACCTTCCCCCAGTGTCTGAACAGATCATGCAGACACTGAGTGAGCTTGCCAAGACCTTCCAGGAC ATGGCTGACCGCTGCTTGCTCGTCCTGCATCTGGAAGTGAGAGTTCATTGTTTCCACTATCTCATCCCTC TGGCAAAGGAGGGGAACTATGCCATCGTTGCCAATGTGGAGAGTATGGATTACGACCCTCTAGTGGTCAA GCTCAACAAAGACATCAGTGCCATGGAAGAGGCCATGAGCGCCAGCCTCCAGCAACATAAGTTCCAGTAC ATCTTTGAAGGTCTGGGACACCTCATCTCCTGTATCCTCATTAATGGGGCCCAATACTTCCGGCGCATCA GTGAGTCTGGCATCAAGAAAATGTGTAGGAACATTTTTGTTCTTCAGCAGAACTTGACCAACATCACCAT GTCACGGGAGGCAGACTTGGACTTTGCAAGGCAGTACTACGAGATGCTGTACAACACAGCCGACGAGCTC CTGAACCTGGTGGTGGACCAGGGTGTGAAGTACACAGAGCTAGAGTACATCCATGCCCTGACCCTGCTGC ACCGAAGCCAGACTGGTGTGGGGGACCAGACCACCCAGAACACCAGGCTGCAGAGACTCAAGGAGATCAT CTGTGAGCAGGCTGCCATCAAGCAAGCCACCAAGGACAAGAAAATAACCACTGTGTGA
Translation (975 aa):
MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTSDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELT TAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQK LEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIEELHRHLYIKSTSRVVQ RNKEKGKMSSHGKDPSPGPLIDVSNIPTPRKFLDASQYSAAGGSSVREMNLQDVKEDLECDPEENSTLFM GILIQGLARLKKIPETVKAIKERLEQELKQIVKRSTTQVADSAYQRGESLTVDNQPRLLLELLELLFDKF NAVATAHSVVLGYLQDSVGTQLTQQEEIKLYDMADVWVKIQDVLQMLLTEYLDMKNTRTASEPSAQLSYA STGREFAAFFAKKKPQRPKNSLFKFESSSHAISMSAYLREQRRELYSRSGELQGGPDDNLIEGGGTKFVC KPGARNITVIFHPLLRFIQEIEHALGLGPAKQCPLREFLTVYIKSIFLNQVLAEINKEIEGVTKTSDPLK ILANADTMKVLGVQRPLLQSTIIVEKTVQDLMNLMHDLSAYSDQFLNMVCVKLQEYKDTCSTAYRGIVQS EEKLVISASWAKDDDISRLLKSLPNWTNMAQPKQLRPKREEEEDFIRAAFGKESEVLIGNLGDKLIPPQD ILRDVSDLKALANMHESLEWLAGRTKSAFSNLSTSQMLSPAQESHVNMDLPPVSEQIMQTLSELAKTFQD MADRCLLVLHLEVRVHCFHYLIPLAKEGNYAIVANVESMDYDPLVVKLNKDISAMEEAMSASLQQHKFQY IFEGLGHLISCILINGAQYFRRISESGIKKMCRNIFVLQQNLTNITMSREADLDFARQYYEMLYNTADEL LNLVVDQGVKYTELEYIHALTLLHRSQTGVGDQTTQNTRLQRLKEIICEQAAIKQATKDKKITTV

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH