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Report for CCDS19806.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19806.2 Public Mus musculus 5 Adap1 23 108 98 CCDS HistoryNCBI Gene:231821Re-query CCDS DB by CCDS ID:19806.2Re-query CCDS DB by GeneID:231821See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 19806.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110865.1 ENSMUSP00000106489.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110865.1Link to Ensembl Protein Viewer:ENSMUSP00000106489.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110865Re-query CCDS DB by Protein ID:ENSMUSP00000106489
Original member Current member NCBI NM_172723.4 NP_766311.2 Accepted alive Link to Nucleotide Sequence:NM_172723.4Link to Protein Sequence:NP_766311.2Re-query CCDS DB by Nucleotide ID:NM_172723Re-query CCDS DB by Protein ID:NP_766311Link to BLAST:NP_766311.2

Chromosomal Locations for CCDS 19806.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 139273048 139273076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139273335 139273563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139273735 139273806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139274447 139274509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139274729 139274812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139279509 139279655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139280705 139280817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139293136 139293218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139302304 139302395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139307742 139307872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139325281 139325362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1125 nt):
ATGGCCGGGGAGCGGCGCCGGGCGCTGCTGGAGCTACTGACGCGGCCGGGGAACACGCGCTGCGCTGACT
GCGGAGCCCCGGATCCTGACTGGGCGTCCTACACCCTGGGTGTGTTCATCTGTTTGAGCTGCTCTGGGAT
CCACCGGAACATCCCCCAGGTCAGCAAGGTGAAGTCAGTCCGTCTGGATGCCTGGGATGAGGCCCAAGTT
GAGTTCATGGCATCTCATGGGAACGAGGCTGCCAGAGCCACATTTGAGTCCAAAGTACCGCCCTTCTACT
ACCGGCCCACGTTCTCCGACTGCCAACTCCTACGTGAGCAGTGGATCCGTGCCAAGTATGAGAGGCAAGA
ATTCGTTCATGTGGAGAAGCAGGAACCATACTCTACAGGCTACCGTGAGGGCCTTCTCTGGAAGCGTGGG
CGGGACAACGGACAGTTCTTAAGCCGGAAGTTTGTGCTGACAGAACGAGAGGGTGCCCTGAAATACTTCA
ACAAAAACGATGCCAAGGAGCCTAAGGCCGTCATGAAGATTGAGCACCTGAATGCGACCTTCCAGCCAGC
CAAGATGGGCCACCCCCACGGCCTGCAGGTCACCTACTTGAAGGACAACAGCACCCGCAACATCTTTATC
TACCATGAAGACGGCAAGGAGATCGTGGACTGGTTCAATGCACTGCGAGCAGCCCGATTCCACTACCTGC
AGGTGGCTTTCCCAGGAGCCAGTGATGCAGATCTGGTGCCCAAGCTCTCTAGGAACTACCTGAAGGAAGG
CTACATGGAGAAGACAGGGCCCAAGCAGACAGAAGGCTTCCGGAAGCGTTGGTTCACCATGGATGACCGA
AGGCTCATGTACTTCAAAGACCCCCTGGACGCCTTTGCCCGAGGGGAAGTCTTCATTGGCAGCAAGGAAA
GCGGTTACACGGTCCTGGAGGGCCTCCCACTGTCCACCCAGGGTCACCACTGGCCTCATGGCATAACCAT
TGTCACCCCTGACCGCAAATTCCTGTTCACGTGTGAGACGGAGTCAGACCAGAGGGAGTGGATTGCGGCC
TTCCAGAAGGTGGTGGACAGGCCCATGCTGCCTCAGGAGTACGCAGTGGAAGCCCACTTCAAGCATAAAC
CCTAA

Translation (374 aa):
MAGERRRALLELLTRPGNTRCADCGAPDPDWASYTLGVFICLSCSGIHRNIPQVSKVKSVRLDAWDEAQV
EFMASHGNEAARATFESKVPPFYYRPTFSDCQLLREQWIRAKYERQEFVHVEKQEPYSTGYREGLLWKRG
RDNGQFLSRKFVLTEREGALKYFNKNDAKEPKAVMKIEHLNATFQPAKMGHPHGLQVTYLKDNSTRNIFI
YHEDGKEIVDWFNALRAARFHYLQVAFPGASDADLVPKLSRNYLKEGYMEKTGPKQTEGFRKRWFTMDDR
RLMYFKDPLDAFARGEVFIGSKESGYTVLEGLPLSTQGHHWPHGITIVTPDRKFLFTCETESDQREWIAA
FQKVVDRPMLPQEYAVEAHFKHKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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