CCDS Report for Consensus CDS

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Report for CCDS19694.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
19694.1	Public	Mus musculus	5	Sfswap	23	108	98

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19694.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000053737.8	ENSMUSP00000062413.7	Accepted	alive
		NCBI	NM_172276.3	NP_758480.2	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_758480.2	945	Q3USH5	945	100%	0	0

Chromosomal Locations for CCDS 19694.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)

Genome Browser links:

Chromosome	Start	Stop
5	129501379	129501596
5	129503983	129504152
5	129504763	129504894
5	129507144	129507229
5	129513047	129513272
5	129514753	129514865
5	129516016	129516151
5	129539575	129539815
5	129541326	129541454
5	129542039	129542132
5	129543214	129543379
5	129549454	129549684
5	129550697	129550887
5	129554443	129554708
5	129560680	129560805
5	129569641	129569814
5	129570476	129570548
5	129571002	129571067

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2838 nt):
ATGTACGGTGCCGGCGGGGGCCGTGCCAAGCCGGAGAGGAAAGGCGGAGTGAAGGAGGAGGCCGGGCCGG GCGGCACCGGCACTGGGGGCAACCGGGTGGAGCTTCTGGTTTTCGGCTATGCCTGCAAGTTGTTCCGCGA CGACGAGCGGGCTTTGGCCCAGGAACAGGGACAGCACCTCATCCCCTGGATGGGGGACCCCAAGATCCTC ATCGACAGATACGACGGGCGTGGTCACCTGCATGACCTCTCTGCGTACGATGCTGAGTACGCCACGTGGA ACCGAGACTACCAGCTGTCTGAAGAGGAGGCTCGGGTAGAGGCGCTGTGTGATGAAGAGAGGTATTTAGC CTTGCATACGGACTTGCTTGAGGAGGAGGCAAGGCAAGAGGAAGAATACAAAAGATTGAGTGAAGCGCTG GCGGAGGATGGAAACTACAGTGCCGTAGGGTTCACTTACGGCAGCGACTATTATGACCCGTCAGAGCCCA CGGAAGAGGAGGAGCCTTCGAAGCAGAGAGAAAAAAATGAGGCTGAAAACTTGGAAGAAAATGAAGAACC TTTCATCGCCCCTTTAGGATTAAGCGTCCCGTCTGATGTGGAGCTGCCACCAACAGCCAAAATGCATGCC ATCATTGAGCGCACAGCCAACTTCGTATGCAAGCAGGGAGCACAGTTCGAGATCATGCTGAAGGCCAAGC AAGCTCGAAACTCACAGTTCGACTTCCTACGGTTTGATCACTACCTCAACCCCTACTATAAATTCATCCA GAAAGCCATGAAAGAAGGACGGTACACGGTGCTAGCTGAGAGCAAGAACGAGGAGAAGAAAAAGTCTGGG CCAACCTCTGACAACGAAGAGGAAGATGATGAGGAAGATGGGAGTTACCTGCACCCGTCTCTCTTTGCTT CCAAGAAGAGCAGCCGCCTGGAAGAGCTGATGAAGCCCTTGAAGGTGGTGGACCCGGATCACCCTCTAGC AGCCCTTGTCCGGAAAGCACAAGCTGACAGCTCAGCTCCAGCCCCACCCACTGCAGATGGCACACCTGCT CAGCCCTCCCAGGTGGAGTACACGGCAGACTCAACTGTGGCAGCCATGTACTACAGCTACTACATGTTGC CAGATGGTACCTACTGCCTGGCACCACCCCCACCTGGGATCGATGTGGCCACTTACTACAGCACCCTTCC TGCTGGAGTGACTGTGTCCAGCTCACCTGGTGTGACTACCACTGTACCACCGCCTCCTGGGACCACACCT CCTCCACCCCCAACCACAGCTGAACCAAGCAGCGGGGTTACCTCCACAACCACCACCACAAGTGCGCTTG CTCCCGTGGCCATCATACCCCCGCCCCCCGACATCCAGCCTGTGATTGACAAGCTGGCAGAGTACGTCGC TAGAAACGGCCTTAAATTTGAGACCAGTGTTCGAGCCAAGAACGATCAAAGATTTGAATTTCTTCAGCCC TGGCACCAGTACAACGCCTACTACGAGTTTAAGAAGCAGTTCTTCCTGCAGAAAGAAGGAGGCGGTAGCA CACAGGCAGCATCAACAGCTGAAGAGGCTCCCACAGAAACCGCTGTTGAAGAGTCGGGTGAAGCTGGAGA GGACGGCGCTCCTGAGGGTATGGCAGAGACTGGGGGAAGAGGCAGCGGGAAGAAGGAGGCTGGGTCCAGC AAGAGCACCGTGGACGGGAAGCTGGTAAAAGCTTCTTTTGCTCCAATAAGCTTTGCCATCAAAGCCAAAG AAAATGACCTCCTTCCCTTGGAGAAAAACCGTGTCAAGCTGGACGATGACAGTGAAGAGGATGAAGAAAG CAGGGAGTGCCAGGAAAGCACAAGCAGCGTGGCCAACCCCAGCCCTGCTGCCGCCCCGCCCTCCGTGGCT GTAGAGGAGAAGAAACCACAGCTTACCCAGGAGGAGCTGGAAGCCAAGCAAGCAAAACAAAAGCTGGAGG ACCGCCTTGCTGCTGCTGCCCGGGAAAAGCTAGCCCAGGCGTCCAAGGAATCAAAGGAGAAGCAGCTTCA GGCTGAACGTAAAAGGAAAGCAGCGTTGTTCTTACAAACCTTAAAAAATCCTCTTCCAGAAGCAGAAGTT GGAAAACTTGAGGAGAGTACTTTCGGGGTTGAGGACACTGGTGTCATGCCCTGTCCTCTGCTGGTTGGTG GTAGAACTCTGCCCATATTGGAAGGGAAGCCTCCAGAAAGGCCTTCAAACAGATGCAGAGATCCACCAAG AGAAGAAGAAAGAGAGAAAAAGAAGAAGAAGCACAAAAAACGGTCTCGGACAAGGTCCCGCTCTCCCAAG TACCACTCGTCTTCCAAGCCCAGGTCTAGATCCCACTCAAAAGCAAAGCACTCCCTGCCCAGTGCCTACC GGACAGTGCGGCGGTCAAGGTCACGGTCTCGGTCCCCAAGAAGGAGAGCTCACTCTCCTGAGAGACGGCG GGAAGAAAGGAGTGTCCCTACAGCCTACCGGATGAGCGGCAGCCCTGGGGTCAGCAGGAAAAGGACCCGT TCCAGAAGTCCCCACGAGAAGAAGAAGAAACGGCGCTCACGGTCTCGCACCAAAGCCAAGGCCCGGTCGC AGTCAACATCCCCGAGTAAACAGGCCGCACAGCGTCCCTCGGCCCACTCAGCCCACTCGGCCAGCATCTC TCCTGTGGAGAGCCGAGGTTCCTCCCAGGAACGCTCCAGGGGGGTTTCTCAGGAAAAAGATGGCCAGATC TCCTCAGCAATCGTCTCCTCTGTGCAGAGCAAAATAACTCAGGATCTCATGGCCAAAGTAAGAGCAATGC TCGCAGCTTCAAAAAACCTGCAAACCAGTGCATCCTGA
Translation (945 aa):
MYGAGGGRAKPERKGGVKEEAGPGGTGTGGNRVELLVFGYACKLFRDDERALAQEQGQHLIPWMGDPKIL IDRYDGRGHLHDLSAYDAEYATWNRDYQLSEEEARVEALCDEERYLALHTDLLEEEARQEEEYKRLSEAL AEDGNYSAVGFTYGSDYYDPSEPTEEEEPSKQREKNEAENLEENEEPFIAPLGLSVPSDVELPPTAKMHA IIERTANFVCKQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYYKFIQKAMKEGRYTVLAESKNEEKKKSG PTSDNEEEDDEEDGSYLHPSLFASKKSSRLEELMKPLKVVDPDHPLAALVRKAQADSSAPAPPTADGTPA QPSQVEYTADSTVAAMYYSYYMLPDGTYCLAPPPPGIDVATYYSTLPAGVTVSSSPGVTTTVPPPPGTTP PPPPTTAEPSSGVTSTTTTTSALAPVAIIPPPPDIQPVIDKLAEYVARNGLKFETSVRAKNDQRFEFLQP WHQYNAYYEFKKQFFLQKEGGGSTQAASTAEEAPTETAVEESGEAGEDGAPEGMAETGGRGSGKKEAGSS KSTVDGKLVKASFAPISFAIKAKENDLLPLEKNRVKLDDDSEEDEESRECQESTSSVANPSPAAAPPSVA VEEKKPQLTQEELEAKQAKQKLEDRLAAAAREKLAQASKESKEKQLQAERKRKAALFLQTLKNPLPEAEV GKLEESTFGVEDTGVMPCPLLVGGRTLPILEGKPPERPSNRCRDPPREEEREKKKKKHKKRSRTRSRSPK YHSSSKPRSRSHSKAKHSLPSAYRTVRRSRSRSRSPRRRAHSPERRREERSVPTAYRMSGSPGVSRKRTR SRSPHEKKKKRRSRSRTKAKARSQSTSPSKQAAQRPSAHSAHSASISPVESRGSSQERSRGVSQEKDGQI SSAIVSSVQSKITQDLMAKVRAMLAASKNLQTSAS

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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