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Report for CCDS19647.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19647.1 Public Mus musculus 5 Gpn3 23 108 98 CCDS HistoryNCBI Gene:68080Re-query CCDS DB by CCDS ID:19647.1Re-query CCDS DB by GeneID:68080See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19647.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031420.10 ENSMUSP00000031420.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031420.10Link to Ensembl Protein Viewer:ENSMUSP00000031420.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000031420Re-query CCDS DB by Protein ID:ENSMUSP00000031420
Original member Current member NCBI NM_024216.2 NP_077178.1 Accepted alive Link to Nucleotide Sequence:NM_024216.2Link to Protein Sequence:NP_077178.1Re-query CCDS DB by Nucleotide ID:NM_024216Re-query CCDS DB by Protein ID:NP_077178Link to BLAST:NP_077178.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077178.1 284 Q9D3W4 284 100% 0 0

Chromosomal Locations for CCDS 19647.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 122372609 122372656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122373911 122374019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122378467 122378634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122379981 122380105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122381190 122381305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122381398 122381494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122382048 122382176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122382261 122382323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (855 nt):
ATGCCTCGATATGCGCAGCTCGTCATGGGCCCCGCGGGCAGCGGGAAGAGCACCTACTGTTCCACCATGG
TTCAGCACTGTGAAGCCCTCAACCGATCTGTCCAGGTGGTCAACCTGGACCCGGCGGCAGAACACTTCAA
CTACCCTGTCATGGCCGACATCCGGGAGCTGATCGAGGTGGACGATGTGATGGAGGACGAGTCTCTGCGG
TTCGGCCCCAACGGAGGCCTGGTCTTCTGCATGGAGTACTTTGCCAATAACTTTGACTGGCTGGAGAACT
GCCTGGGCCACGTCGAGGACGATTACATCCTTTTTGACTGTCCAGGTCAGATTGAGCTCTACACCCACCT
GCCTGTCATGAAGCAGCTGGTCCAGCAGCTTGAGCAGTGGGAGTTCCGAGTGTGCGGAGTGTTCCTTGTT
GATTCTCAGTTCATGGTGGAGTCATTCAAGTTTATCTCCGGCATCCTGGCAGCCTTGAGTGCCATGGTTT
CTCTAGAGATCCCACAGGTTAACATCATGACGAAGATGGACCTGCTGAGTAAGAAAGCCAAGAAGGAGAT
TGAGAAGTTTCTAGATCCAGACATGTACTCTCTGATAGACGATTCAACCGGTGACTTAAGAAGCCAAAAG
TTTAAGAAGTTGACGAAGGCCGTGTGTGGCCTGGTGGATGACTACAGCATGGTCCGCTTCCTGCCATACG
ACCAGTCAGACGAGGAGAGCATGAACATCGTGCTCCAGCACATCGACTTCGCCATTCAGTACGGGGAGGA
CTTGGAGTTCAAGGAGCCGAGGGAGCATGAAGAAGAGTCTTCCTCCATGTTTGATGAGTATTTCCAAGAA
CGGCAGAATGAGTGA

Translation (284 aa):
MPRYAQLVMGPAGSGKSTYCSTMVQHCEALNRSVQVVNLDPAAEHFNYPVMADIRELIEVDDVMEDESLR
FGPNGGLVFCMEYFANNFDWLENCLGHVEDDYILFDCPGQIELYTHLPVMKQLVQQLEQWEFRVCGVFLV
DSQFMVESFKFISGILAALSAMVSLEIPQVNIMTKMDLLSKKAKKEIEKFLDPDMYSLIDDSTGDLRSQK
FKKLTKAVCGLVDDYSMVRFLPYDQSDEESMNIVLQHIDFAIQYGEDLEFKEPREHEEESSSMFDEYFQE
RQNE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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