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Report for CCDS19628.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19628.1 Public Mus musculus 5 Oas1f 23 108 98 CCDS HistoryNCBI Gene:243262Re-query CCDS DB by CCDS ID:19628.1Re-query CCDS DB by GeneID:243262See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19628.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057814.4 ENSMUSP00000056993.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057814.4Link to Ensembl Protein Viewer:ENSMUSP00000056993.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000057814Re-query CCDS DB by Protein ID:ENSMUSP00000056993
Original member Current member NCBI NM_145153.3 NP_660135.2 Accepted alive Link to Nucleotide Sequence:NM_145153.3Link to Protein Sequence:NP_660135.2Re-query CCDS DB by Nucleotide ID:NM_145153Re-query CCDS DB by Protein ID:NP_660135Link to BLAST:NP_660135.2

Chromosomal Locations for CCDS 19628.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 120847392 120847574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120848169 120848457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120851472 120851668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120855396 120855628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120856320 120856473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120857588 120857626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1095 nt):
ATGGTGAAGGATCTTAGCAGCACCCCAGCCTGTGAGCTGGACAAGTTCATACGTGATCATCTCCTTCCCG
ATTCCAGCTTCCATGCTGAGGCCAGAGCAGACGTGGACTTCATAGGTGCTTTCCTGAAGGAGAGATGCTT
CCAAGGTGCCACCCACCCTGTGAGGGTCTCCAGGGTTGTGATGGGCGGCTCCTACGACGAACACACTGCA
CTCAAGAGCAAGTCAGAGGCTAAAATGGTGGTGTTCCTTAACAATCTCACCAGCTTCGAGGAGCAGTTAA
AGCGACGGGGAGAGTTCATTGAGGAAATTCGGAAACACCTGTGTCAGCTGCAGGATGAGAAACCATTTAA
AGTGAAGTTTGAGGTGCAGAGCTCAGAGGAGCCCAACTCCAGGTCTCTGAGCTTCAAGCTGAGCTCCCCT
GAGCTCCAGCAGGAGGTGGAATTTGATGTGCAGCCAGCCTATGATGTCCTGTATGAACTGAGAAACAACA
AGTATGCTGAACTCTACTTGTACAACAAAATCTACGCCCAACTCATCCATGAGTGCACCACACTAAAGAA
GGAGGGCGAGTTCTCCATCTGCTTCACCGACCTCCATCAGAGCTTCCTGGAGGATCGTGCACCCAAGCTG
AAGAACCTCATCCGTTTGGTCAAGCACTGGTATCAACTGTGTAAGGAGAAGCTGGGGAAGCCGCTGCCCC
CACAGTATGCCCTGGAGCTGCTCACAGTGTACGCCTGGGAAAGTGGGAGTAGAGACTGCGAATTCAACAC
AGCCCAGGGCTTCCGAACTGTCTTGGAACTGGTCACCAAGTACAAGTGGCTTCGAATCTACTGGACAGTG
TATTATGACTTTAGAAAGACGAAGGTCTCTGAATACCTGCACAAAATGCTCCAAAAAGTCAGGCCTGTGA
TCCTGGACCCTGCTGACCCAACAAGGAACGTGGCTGGTACCAACCTACTAGGCTGGGGGCTGTTGGCAAA
AGAAGCTGCCATCTGGCTGCAGTCCTCCTGCTTTAGGAACTGTGATACGTGCCTCGTGGGCCCCTGGGGT
GTGCCGATGAAGGTCGAGATTCCACAGGACTGTGTCCTTCTATGA

Translation (364 aa):
MVKDLSSTPACELDKFIRDHLLPDSSFHAEARADVDFIGAFLKERCFQGATHPVRVSRVVMGGSYDEHTA
LKSKSEAKMVVFLNNLTSFEEQLKRRGEFIEEIRKHLCQLQDEKPFKVKFEVQSSEEPNSRSLSFKLSSP
ELQQEVEFDVQPAYDVLYELRNNKYAELYLYNKIYAQLIHECTTLKKEGEFSICFTDLHQSFLEDRAPKL
KNLIRLVKHWYQLCKEKLGKPLPPQYALELLTVYAWESGSRDCEFNTAQGFRTVLELVTKYKWLRIYWTV
YYDFRKTKVSEYLHKMLQKVRPVILDPADPTRNVAGTNLLGWGLLAKEAAIWLQSSCFRNCDTCLVGPWG
VPMKVEIPQDCVLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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