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Report for CCDS19607.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19607.1 Public Mus musculus 5 Fbxo21 23 108 98 CCDS HistoryNCBI Gene:231670Re-query CCDS DB by CCDS ID:19607.1Re-query CCDS DB by GeneID:231670See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19607.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000202447.3 ENSMUSP00000143873.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000202447.3Link to Ensembl Protein Viewer:ENSMUSP00000143873.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000202447Re-query CCDS DB by Protein ID:ENSMUSP00000143873
Original member Current member NCBI NM_145564.4 NP_663539.1 Accepted alive Link to Nucleotide Sequence:NM_145564.4Link to Protein Sequence:NP_663539.1Re-query CCDS DB by Nucleotide ID:NM_145564Re-query CCDS DB by Protein ID:NP_663539Link to BLAST:NP_663539.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663539.1 627 Q8VDH1-1 627 100% 0 0

Chromosomal Locations for CCDS 19607.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 117976801 117977039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117977858 117977993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117979741 117979835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117986099 117986220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117988778 117988924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117989124 117989260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117990803 117990939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117994482 117994661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117995370 117995502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 118000317 118000528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 118002015 118002172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 118008010 118008197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1884 nt):
ATGGCGTCGGTAGCGGGGGACAGCGCTATGGAGGTGGTGCCGGCGCTGGCCGAGGAGGCCGCGGCTGAGG
CGACGGGCCCCAGCTGCCTGGTGCAGCTGCCGGGCGAGGTGCTGGAGTACATCCTGTGCAGCGGCTCGCT
CACGGCGCTGGACATCGGCCGCGTGTCCAGCACCTGCCGCCGCCTGCGCGAGGTGTGCCAGAGCAGCGGG
CAGGTGTGGAAGGAGCAGTTCCGGGTGAGGTGGCCCTCCCTGATGAAGCACTACAGCCCCACCGACTACG
TCAATTGGTTAGAGGAATATAAAGTTCGGCAGAAAGCTGGGTTAGAAGCCCGGAAGATTGTAGCTTCCTT
CTCCAAGCGGTTCTTTTCAGAGCACGTCCCCTGTAATGGCTTCAGTGACATTGAAAACCTTGAGGGCCCA
GAGATCTTTTTTGAGGATGAGCTGGTGTGTATCCTAAACATGGAAGGAAGGAAAGCTTTGACCTGGAAAT
ACTACGCAAAGAAAATTCTCTACTACCTGCGGCAGCAGAAAATCCTCAATAACCTCAAGGCGTTCCTGCA
GCAGCCCGACGATTACGAGTCCTATCTCGAAGGTGCCGTTTACATCGACCAGTACTGCAACCCACTCTCC
GACATCAGCTTCAGAGACATCCAGGCCCAGATCCACAGCATTGTGGAGCTTGTGTGCAAAACCCTCCGTG
GCATCAACAGCCGCCACCCCAGCCTGACCTTCAGGGCAGGTGAGTCCTCTATGATAATGGAGATAGAACT
TCAGAGCCAAGTGCTGGACGCTATCAACTATGTCCTGTATGACCAGCTGAAGTTCAAAGGGAACCGCATG
GACTACTATAATGCCTTGAACCTCTACATGCACCAGGTGTTGACCCGCAGAACAGGAATCCCCATCAGCA
TGTCTCTGCTCTACCTGACCGTCGCCCGGCAGCTGGGGGTTCCCCTGGAGCCTGTCAACTTCCCAAGCCA
CTTCCTGCTGCGGTGGTGCCAAGGTGCAGAAGGGGCAACCCTGGACATCTTTGACTACATCTACATAGAT
GCTTTTGGGAAGGGCAAGCAGCTGACAGTGAAAGAGTGTGAGTACCTGATTGGCCAGCACGTGACGGCAG
CACTCTACGGCGTGGTGAATGTGAAGAAGGTGCTACAGCGGATGGTGGGCAACTTGCTGAGCCTGGGCAA
GAGGGAAGGCATTGACCAGTCCTACCAGCTCCTCAGAGACTCCTTGGACCTGTACCTGGCGATGTACCCG
GACCAGGTGCAGCTCCTGCTCCTCCAAGCCAGACTCTACTTCCACCTGGGCATCTGGCCAGAGAAGTCTT
TCTGTCTTGTCTTGAAGGTGCTTGACATCCTCCAGCACATCCAGACCCTGGACCCCGGGCAGCACGGGGC
GGTGGGCTATCTCGTGCAGCATACCTTAGAGCACATTGAGCGTAAGAAGGAGGAGGTGGGCGTGGAGGTG
AAGCTGCGCTCCGAGGAGAAGCACAGGGATGTCTGCTACTCCATCGGGCTTGTGATGAAGCATAAGAGGT
ACGGCTACAACTGTGTGATCTACGGCTGGGACCCTACGTGCATGATGGGGCATGAGTGGATCCGAAACAT
GAATGTGCACAGCCTGCCTCATGGCCACCATCAGCCCTTCTACAACGTCCTGGTGGAGGATGGCTCCTGC
AGATATGCAGCCCAAGAAAACCTGGAATACAACGTGGAGCCTCAGGAAATCTCGCACCCAGATGTGGGGC
GCTACTTCTCGGAGTTCACAGGCACACACTACATCCCAAATGCAGAGCTGGAGATCCGGTACCCCGAGGA
CCTGGAGTTTGTGTACGAGACAGTGCAGAATATTTACAGTGCAAAGGAGGACACAGCCGAGTAA

Translation (627 aa):
MASVAGDSAMEVVPALAEEAAAEATGPSCLVQLPGEVLEYILCSGSLTALDIGRVSSTCRRLREVCQSSG
QVWKEQFRVRWPSLMKHYSPTDYVNWLEEYKVRQKAGLEARKIVASFSKRFFSEHVPCNGFSDIENLEGP
EIFFEDELVCILNMEGRKALTWKYYAKKILYYLRQQKILNNLKAFLQQPDDYESYLEGAVYIDQYCNPLS
DISFRDIQAQIHSIVELVCKTLRGINSRHPSLTFRAGESSMIMEIELQSQVLDAINYVLYDQLKFKGNRM
DYYNALNLYMHQVLTRRTGIPISMSLLYLTVARQLGVPLEPVNFPSHFLLRWCQGAEGATLDIFDYIYID
AFGKGKQLTVKECEYLIGQHVTAALYGVVNVKKVLQRMVGNLLSLGKREGIDQSYQLLRDSLDLYLAMYP
DQVQLLLLQARLYFHLGIWPEKSFCLVLKVLDILQHIQTLDPGQHGAVGYLVQHTLEHIERKKEEVGVEV
KLRSEEKHRDVCYSIGLVMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVHSLPHGHHQPFYNVLVEDGSC
RYAAQENLEYNVEPQEISHPDVGRYFSEFTGTHYIPNAELEIRYPEDLEFVYETVQNIYSAKEDTAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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