NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19564.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19564.1 Public Mus musculus 5 Ube3b 23 108 98 CCDS HistoryNCBI Gene:117146Re-query CCDS DB by CCDS ID:19564.1Re-query CCDS DB by GeneID:117146See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19564.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074002.11 ENSMUSP00000073652.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074002.11Link to Ensembl Protein Viewer:ENSMUSP00000073652.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000074002Re-query CCDS DB by Protein ID:ENSMUSP00000073652
Original member NCBI NM_054093.3 NP_473434.2 Updated not alive Link to Nucleotide Sequence:NM_054093.3Link to Protein Sequence:NP_473434.2Re-query CCDS DB by Nucleotide ID:NM_054093Re-query CCDS DB by Protein ID:NP_473434
Current member NCBI NM_054093.4 NP_473434.2 Accepted alive Link to Nucleotide Sequence:NM_054093.4Link to Protein Sequence:NP_473434.2Re-query CCDS DB by Nucleotide ID:NM_054093Re-query CCDS DB by Protein ID:NP_473434Link to BLAST:NP_473434.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_473434.2 1070 Q9ES34 1070 100% 0 0

Chromosomal Locations for CCDS 19564.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 114387118 114387278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114387381 114387501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114388723 114388782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114389065 114389169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114390390 114390486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114392098 114392183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114393077 114393159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114398408 114398513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114398762 114398882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114399790 114399967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114401268 114401437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114402522 114402689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114404540 114404711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114406172 114406290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114406746 114406860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114407544 114407643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114408097 114408216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114411019 114411195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114411304 114411414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114412166 114412303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114412422 114412487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114412851 114412909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114415202 114415384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114415577 114415688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114418538 114418630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114419478 114419669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3213 nt):
ATGTTCACTGTATCTCAGACCTCCAGAGCATGGTTCATCGACAGAGCCCGGCAGGCACGAGAAGAGAGGC
TGGTGCAGAAGGAGCGGGAGCGCTCAGCGGTGACGATCCAGGCCCTAGTCCGCAGTTTCCTCTGCCGGAG
GCGACTGCACAGAGACATCAGGAAAGAGATTGATGAGTTTTTTAGTGCTGATGAGTCTGGGTCCAGTAAA
AGAAGTGCACTTTGTATTTTTAAGATTGCCAGGAGACTGCTGTTTATATGCAAAACTACCGAGGACAGCG
AGAGACTGGAGAAGTTGTGTCGAAGCATCCTGAACAGCATGGATGCCGAGAATGAGCCAAAGGTGTGGTA
CGTGTCCCTGGCTCTCTCCAAGGACCTCACGCTGCTGTGGATTAAGCAGATCAAGAGCATCCTGTGGCAC
TGCTGTGAGCTTCTGGGGCAGCTCAAGCCAGAGATCTTACAGGACTCCAGGCTCATCACGCTGTACCTCA
CCATGCTTGTGACCTTCACAGACACTTCAACATGGAAGATTCTCCGGGGAAAAGGTGAGAGCCTTCGGCC
AGCCCTGAACCACATTTGCGCAAATATAATGGGCCATCTCAACCAGCGTGGACTTTACTCTGTATTGCAG
GTACTGCTGACCCGAGGCCTGGCCAGGCCCCGGCCCTGTCTGTCCAAAGGCATGTTAACAGCAGCCTTCT
CTCTGGCCCTGCGCCCTGTGGTTGCTGCGCAGTTCTCAGACAATCTTATGCGACCATTCATCATCCACGT
CATGTCGGTACCTGCTCTCGTGGCTCATCTCAGCACCGTGGCCCCTGAGCGCCTCGGCGTTTTAGAGTCC
CATGACATGCTTCGTAAATTCATCGTCTTCCTGAGAGATAGAGACCGATGCCGCGATGCTTGTGAGAGTT
TAGAAGGCTGCCATACCCTGTGTCTCATGGGCAATCTCCTGCACTTGGGCTCCCTCAGCCTCAGGCTGTT
AGAGGAAGAGATGGATGGGTTTGTGAGCGCGCTCACGCAGATGCTGTGCTACTGTCAGAAGTACGTGGCT
CAGAAGAAGTCCAACCTGACCCACTGGCACCCTGTGCTCGGCTGGTTTTCCCAACCTGTGGATTACGGCC
TCAATGATTCCATGTACCTGATCACCAAGCAGCTGCAGTTCCTGTGGGCGGTGCCTCTCATCCGCATTCT
CTTCAGTGACATCCTGAGCAGGAAGCTGCTGGAGCATGCAGAGCCGGCCCCGGTGCAACCGCAGCCGTCC
TCACCGCAGACGGTGCTCCCCGTGAAGAGCCTCCTCAAGCGTGCGTTTCAGAAGTCGGCTTCGGTTCGGA
ACATCCTCAGGCCTGTTGGGGGCCGCCGTGTCGACTCCGCTGAGGTGCGGAAGGTCTGCAACATTTGCGT
GCTCTACCAGACCTCGCTGACGACCCTCACCCAGATCCGCCTGCAGATCCTCACAGGTCTTACGTACCTG
GATGACCTGCTGCCCAAGCTCTGGGCGTTTATCTGTGAGCTGGGGCCCCACGGCGGGCTCAAGCTCTTCC
TGGAGTGCCTGAACAATGACACTGGAGAGTCCAAGCAGCTCCTGGCCATGCTGATGCTCTTCTGTGACTG
TTCCCGGCACCTCATCACCATCCTCGATGACATTGAAGTTTATGAAGAACAGATCTCCTTCAAGCTGGAA
GAGCTGGTCACCATCTCCTCGTTCCTCAATTCCTTCGTGTTTAAGATGATCTGGGACGGAATTGTAGAGA
ATGCCAAGGGTGAGACCTTGGAGCTGTTCCAGTCCGTCCATGGCTGGCTGATGGTGCTGTATGAGCGAGA
CTGCCGCCGGCGCTTTGCTCCGGAGGACCACTGGCTACGGAGGGACCTCAAGCCTGGTGTGCTCTTCCAG
GAGCTCGACAAGGACCGAAGGAGGGCTCAGCTGGTCCTGCAGCACATCCCCCACGTCGTGCCTCACAAGA
ACAGAGTTCTTCTGTTCCGGAACATGGTTATCAAGGAGAAAGAGAAGCTGGGGCTTGTGGAGACCAGCTC
TGCCTCTCCTCACGTCACCCACATCACCATCCGAAGGTCCCGGATGTTGGAGGACGGCTACGAACAGCTC
CGGCAGCTTTCCCAGCATGCCATGAAGGGTGTGATCCGAGTGAAGTTTGTCAACGACCTCGGGGTGGACG
AGGCTGGGATTGACCAGGATGGTGTCTTCAAGGAGTTTCTGGAAGAGATCATCAAGAGGGTGTTTGACCC
CGCACTCAACCTGTTCAAGACAACCAGCGGGGATGAGCGGCTGTACCCATCACCCACGTCCTACATTCAC
GAGAATTACCTGCAGCTCTTCGAGTTTGTGGGGAAGATGCTGGGAAAGGCAGTGTATGAGGGGATCGTGG
TAGATGTGCCCTTTGCCTCCTTCTTCCTGAGCCAGATGCTCGGGCACCACCACAGCGTCTTCTACAGCTC
CGTGGATGAGCTTCCCTCCCTGGACTCGGAGTTTTATAAAAACCTCACCTCCATCAAGCGCTACGATGGA
GACATCGCAGACCTCGGGCTGACGCTGTCTTACGATGAAGACGTCATGGGTCAGCTCGTCTGCCACGAAC
TGGTTCCCGGAGGGAAGACCATCCCGGTTACAGATGAGAACAAAATTAGCTACATCCATCTGATGGCGCA
TTTCCGAATGCACACTCAAATTAAAAACCAGACAGCTGCTCTTATCAGTGGCTTCCGTTCCATCATCAAG
CCCGAGTGGATCCGAATGTTCTCTACCCCTGAGCTTCAGCGCCTCATCTCCGGGGACAACGCTGAGATAG
ATCTGGAAGACTTAAAGAAGCACACAGTGTACTACGGTGGCTTTCATGGGAGCCACAGGGTCATCATCTG
GCTCTGGGATATCCTGGCTTCCGACTTCACGCCTGAAGAAAGAGCCATGTTCCTGAAGTTTGTGACCAGC
TGCTCCCGGCCCCCGCTCCTAGGATTCGCCTACCTCAAGCCTCCGTTCTCCATCCGCTGTGTGGAAGTAT
CAGATGACCAGGACACTGGGGATACCCTGGGCAGCGTCCTCAGGGGCTTCTTCACCATCCGCAAGAGGGA
GCCAGGGGGGCGTCTGCCCACATCTTCCACTTGCTTCAACCTGCTTAAGCTGCCCAACTACAGCAAGAAG
AGCGTACTGCGAGAGAAACTACGCTATGCCATCAGCATGAACACGGGCTTTGAGCTCTCCTAA

Translation (1070 aa):
MFTVSQTSRAWFIDRARQAREERLVQKERERSAVTIQALVRSFLCRRRLHRDIRKEIDEFFSADESGSSK
RSALCIFKIARRLLFICKTTEDSERLEKLCRSILNSMDAENEPKVWYVSLALSKDLTLLWIKQIKSILWH
CCELLGQLKPEILQDSRLITLYLTMLVTFTDTSTWKILRGKGESLRPALNHICANIMGHLNQRGLYSVLQ
VLLTRGLARPRPCLSKGMLTAAFSLALRPVVAAQFSDNLMRPFIIHVMSVPALVAHLSTVAPERLGVLES
HDMLRKFIVFLRDRDRCRDACESLEGCHTLCLMGNLLHLGSLSLRLLEEEMDGFVSALTQMLCYCQKYVA
QKKSNLTHWHPVLGWFSQPVDYGLNDSMYLITKQLQFLWAVPLIRILFSDILSRKLLEHAEPAPVQPQPS
SPQTVLPVKSLLKRAFQKSASVRNILRPVGGRRVDSAEVRKVCNICVLYQTSLTTLTQIRLQILTGLTYL
DDLLPKLWAFICELGPHGGLKLFLECLNNDTGESKQLLAMLMLFCDCSRHLITILDDIEVYEEQISFKLE
ELVTISSFLNSFVFKMIWDGIVENAKGETLELFQSVHGWLMVLYERDCRRRFAPEDHWLRRDLKPGVLFQ
ELDKDRRRAQLVLQHIPHVVPHKNRVLLFRNMVIKEKEKLGLVETSSASPHVTHITIRRSRMLEDGYEQL
RQLSQHAMKGVIRVKFVNDLGVDEAGIDQDGVFKEFLEEIIKRVFDPALNLFKTTSGDERLYPSPTSYIH
ENYLQLFEFVGKMLGKAVYEGIVVDVPFASFFLSQMLGHHHSVFYSSVDELPSLDSEFYKNLTSIKRYDG
DIADLGLTLSYDEDVMGQLVCHELVPGGKTIPVTDENKISYIHLMAHFRMHTQIKNQTAALISGFRSIIK
PEWIRMFSTPELQRLISGDNAEIDLEDLKKHTVYYGGFHGSHRVIIWLWDILASDFTPEERAMFLKFVTS
CSRPPLLGFAYLKPPFSIRCVEVSDDQDTGDTLGSVLRGFFTIRKREPGGRLPTSSTCFNLLKLPNYSKK
SVLREKLRYAISMNTGFELS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH