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Report for CCDS19546.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19546.1 Public Mus musculus 5 Crybb2 23 108 98 CCDS HistoryNCBI Gene:12961Re-query CCDS DB by CCDS ID:19546.1Re-query CCDS DB by GeneID:12961See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19546.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031295.7 ENSMUSP00000031295.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031295.7Link to Ensembl Protein Viewer:ENSMUSP00000031295.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000031295Re-query CCDS DB by Protein ID:ENSMUSP00000031295
Original member Current member EBI ENSMUST00000112336.7 ENSMUSP00000107955.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112336.7Link to Ensembl Protein Viewer:ENSMUSP00000107955.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112336Re-query CCDS DB by Protein ID:ENSMUSP00000107955
Original member Current member NCBI NM_007773.4 NP_031799.1 Accepted alive Link to Nucleotide Sequence:NM_007773.4Link to Protein Sequence:NP_031799.1Re-query CCDS DB by Nucleotide ID:NM_007773Re-query CCDS DB by Protein ID:NP_031799Link to BLAST:NP_031799.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031799.1 205 P62696 205 100% 0 0

Chromosomal Locations for CCDS 19546.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 113058350 113058518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113062047 113062189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113063115 113063247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113065894 113066012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113068692 113068745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (618 nt):
ATGGCCTCAGACCACCAGACACAGGCGGGCAAGCCCCAGCCCCTTAACCCCAAGATCATCATCTTCGAAC
AGGAGAACTTCCAGGGCCATTCCCACGAGCTCAGCGGGCCCTGCCCCAACCTGAAGGAGACTGGTATGGA
GAAGGCGGGCTCCGTCCTGGTGCAGGCTGGACCCTGGGTGGGCTACGAGCAGGCTAATTGCAAGGGCGAG
CAGTTTGTGTTTGAAAAGGGCGAGTACCCACGTTGGGACTCCTGGACCAGCAGCCGGAGGACAGACTCCC
TCAGCTCTCTGAGGCCCATCAAAGTGGACAGCCAAGAGCACAAGATCATCTTATATGAGAACCCCAACTT
TACTGGCAAGAAGATGGAGATTGTAGACGACGATGTGCCCAGCTTCCATGCCCATGGATACCAGGAAAAG
GTGTCTTCCGTGCGTGTGCAGAGCGGCACGTGGGTGGGGTACCAGTACCCTGGCTACCGTGGGCTGCAGT
ACCTGCTGGAGAAGGGGGATTACAAGGACAACAGCGACTTCGGGGCCCCTCACCCCCAGGTGCAGTCTGT
GCGTCGCATCCGTGACATGCAGTGGCACCAGCGAGGTGCCTTCCACCCCTCCAGCTAG

Translation (205 aa):
MASDHQTQAGKPQPLNPKIIIFEQENFQGHSHELSGPCPNLKETGMEKAGSVLVQAGPWVGYEQANCKGE
QFVFEKGEYPRWDSWTSSRRTDSLSSLRPIKVDSQEHKIILYENPNFTGKKMEIVDDDVPSFHAHGYQEK
VSSVRVQSGTWVGYQYPGYRGLQYLLEKGDYKDNSDFGAPHPQVQSVRRIRDMQWHQRGAFHPSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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