CCDS Report for Consensus CDS

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Report for CCDS19487.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
19487.1	Public	Mus musculus	5	Pkd2	23	108	98

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19487.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000086831.3	ENSMUSP00000084041.3	Accepted	alive
		NCBI	NM_008861.3	NP_032887.3	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_032887.3	966	O35245-1	966	100%	0	0

Chromosomal Locations for CCDS 19487.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)

Genome Browser links:

Chromosome	Start	Stop
5	104459637	104460225
5	104466883	104466996
5	104477043	104477176
5	104478791	104479041
5	104480150	104480374
5	104483025	104483253
5	104486647	104486814
5	104489233	104489414
5	104490644	104490764
5	104494893	104494991
5	104498441	104498562
5	104498758	104498875
5	104499170	104499333
5	104502292	104502439
5	104503452	104503688

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2901 nt):
ATGGTTAACTCCAGACGCGTGCAGCCGCAGCCGCCCGGGGACGCGGGACGCTCGCCCGCGCCGCGAGCGT CCGGACCCGGGCGCCTGGTGGCGGGAGGCGCCGGCCTAGCTGTCCCCGGCGGCCTCGGGGAGCAGCGGGG CCTGGAGATCGAGATGGAGCGCATCCGGCAGGCGGCCGCTCGGGATCCCCCGGCCGGAGCCTCGGCCTCG CCGTCTCCTCCGCTTTCGTCCTGCTCCAGGCAAGCGTGGAGCCGCGACAACCCGGGCTTTGAGGCAGAGG AGGATGACGACGACGACGAGGTGGAAGGAGAAGAAGGAGGGATGGTGGTAGAGATGGATGTGGAGTGGCG CCCGGGCAGTCGGAGGTCGGCCTCCTCCTCGGCCGTGAGCTCGGTGGGCGCCCGCGGCCGAGGGCTCGGG AGCTACCGCGGCGCGGCTCACCTGAGCGGGAGGCGGCGCCGGCTAGAGGACCAGGGCGCGCAGTGTCCCA GCCCCGCGGGCGGCGGGGACCCGCTGCATCGCCACCTCCCGCTGGAGGGCCAGCCACCCCGAGTGGCCTG GGCAGAGAGGCTGGTGCGAGGGCTGCGAGGTCTCTGGGGAACAAGACTCATGGAAGAGAGCAACGCCAAC CGAGAGAAGTACCTGAAAAGTGTGTTACGGGAGCTGGTCACTTACCTCTTTTTCCTCGTAGTCTTGTGCA TCTTGACCTACGGCATGATGAGCTCCAATGTGTACTACTACACTCGGACACTGTCACAGCTATTCATAGA CACCCCAGTGTCGAAAACAGAGAAAACCAACTTTAAAACTCTTTCTTCCATGGAGGACTTCTGGAAGTTC ACCGAAGGCTCCTTCCTGGATGGGCTGTACTGGAAGGCACAGACCAGCAACCACACGCAAGCTGACAACC GAAGCTTTATCTTCTATGAGAACCTGCTGCTAGGAGTGCCGCGTCTACGCCAACTCCGAGTCAGAAACGG ATCCTGCTCCATCCCTCAGGACCTGCGAGATGAAATTAAAGAGTGCTATGACGTCTACTCCGTCAGCAGT GAGGACAGAGCTCCATTTGGACCGCGGAATGGAACTGCGTGGATGTACACAAGTGAGAAGGAGCTGAATG GGAGCAGTCACTGGGGGATCATTGCGTCGTACAGTGGAGCGGGTTACTACCTGGATCTGTCCAGAACCAG GGAGGAGACAGCAGCCCAGCTTGCTGGCCTCAGGAGGAACTTCTGGCTGGACCGGGGCACGCGGGCAGCT TTTATAGACTTCTCGGTGTATAACGCAAACATTAACCTGTTCTGTGTGGTCAGGTTATTGGCGGAGTTCC CAGCAACGGGTGGCGTGGTACCCTCTTGGCAGTTTCAGCCTGTAAAACTGATCCGCTATGTCACAGCCTT TGATTTCTTCCTGGCAGCCTGTGAGATCATCTTTTGTTTCTTTATCATTTACTATGTGGTGGAAGAGATA TTGGAAATTCGGATTCACAGACTGAGCTATTTCAGGAGTTTCTGGAATTGTCTGGATGTTGTGATTGTCG TGTTATCTGTAGTAGCTATGGTGATTAACATTTACCGAATGTCAAATGCAGAGGGGCTGCTACAGTTTCT TGAAGATCAAAATTCTTTCCCCAACTTTGAGCATGTGGCATACTGGCAAATACAGTTCAACAATATAAGT GCTGTCATGGTATTTTTGGTCTGGATTAAGCTCTTCAAATTCATCAATTTTAATAGGACCATGAGCCAGC TCTCCACAACCATGTCTCGATGTGCCAAAGACCTCTTCGGCTTCACCATAATGTTCTCCATCATCTTCTT GGCATACGCACAGCTGGCATACCTTGTCTTCGGCACCCAGGTCGATGACTTCAGCACTTTCCAAGAATGT ATCTTCACCCAGTTCCGCATCATTTTGGGTGATATCAACTTCGCAGAGATCGAGGAAGCTAACCGAGTTT TGGGGCCACTTTATTTTACTACATTTGTGTTCTTTATGTTCTTCATTCTTTTGAATATGTTCCTGGCGAT CATCAATGATTCGTACTCTGAAGTGAAATCCGATCTGGCCCAGCAGAAAGCAGAAATGGAACTCTCAGAC CTTATCAGAAAGGGCTGCCAAAAAGCACTGGTCAAACTAAAACTGAAAAGAAACACTGTAGATGCCATCT CAGAGAGTCTCCGGCAAGGTGGTGGCAAACTGAACTTTGATGAGCTTCGGCAAGACCTGAAAGGGAAGGG CCATACAGATGCAGAGATTGAGGCCATATTCACTAAATATGACCAGGATGGCGACCAGGAACTGACCGAG CGTGAGCATCAACAGATGAGAGATGACTTGGAGAAAGAGAGGGAGGACCTAGACTTGGAACACAGCTCTT TACCACGTCCGATGAGCAGCAGAAGTTTCCCCAGAAGCCTGGATGACTCCGAGGAGGAGGATGACGAAGA CAGTGGCCATAGCTCCAGGAGGAGGGGAAGCATCTCCAGTGGGGTTTCCTATGAAGAGTTCCAAGTACTG GTGAGGCGCGTGGACCGCATGGAGCACTCCATTGGCAGCATCGTTTCCAAGATTGATGCCGTGATTGTCA AGCTGGAGATCATGGAGCGGGCCAAGCTGAAGAGACGAGAGGTGTTAGGACGGCTGCTGGATGGCGTGGC TGAGGATGCGCGACTGGGTCGGGACAGTGAGATCCACAGGGAGCAGATGGAGCGCCTGGTGCGGGAAGAG CTGGAGCGCTGGGAATCGGATGATGCAGCTTCGCAAACAGGTCATGGTGTAAGCACACAAGTGGGACTCG GTGGCCAGCCCCACCCCAGAAACCCGCGCCCTCCTTCCTCCCAGTCTGCAGAGGGCCTGGAAGGTGGAGG TGGAAATGGAAGTGCCAACGTCCATGCCTAA
Translation (966 aa):
MVNSRRVQPQPPGDAGRSPAPRASGPGRLVAGGAGLAVPGGLGEQRGLEIEMERIRQAAARDPPAGASAS PSPPLSSCSRQAWSRDNPGFEAEEDDDDDEVEGEEGGMVVEMDVEWRPGSRRSASSSAVSSVGARGRGLG SYRGAAHLSGRRRRLEDQGAQCPSPAGGGDPLHRHLPLEGQPPRVAWAERLVRGLRGLWGTRLMEESNAN REKYLKSVLRELVTYLFFLVVLCILTYGMMSSNVYYYTRTLSQLFIDTPVSKTEKTNFKTLSSMEDFWKF TEGSFLDGLYWKAQTSNHTQADNRSFIFYENLLLGVPRLRQLRVRNGSCSIPQDLRDEIKECYDVYSVSS EDRAPFGPRNGTAWMYTSEKELNGSSHWGIIASYSGAGYYLDLSRTREETAAQLAGLRRNFWLDRGTRAA FIDFSVYNANINLFCVVRLLAEFPATGGVVPSWQFQPVKLIRYVTAFDFFLAACEIIFCFFIIYYVVEEI LEIRIHRLSYFRSFWNCLDVVIVVLSVVAMVINIYRMSNAEGLLQFLEDQNSFPNFEHVAYWQIQFNNIS AVMVFLVWIKLFKFINFNRTMSQLSTTMSRCAKDLFGFTIMFSIIFLAYAQLAYLVFGTQVDDFSTFQEC IFTQFRIILGDINFAEIEEANRVLGPLYFTTFVFFMFFILLNMFLAIINDSYSEVKSDLAQQKAEMELSD LIRKGCQKALVKLKLKRNTVDAISESLRQGGGKLNFDELRQDLKGKGHTDAEIEAIFTKYDQDGDQELTE REHQQMRDDLEKEREDLDLEHSSLPRPMSSRSFPRSLDDSEEEDDEDSGHSSRRRGSISSGVSYEEFQVL VRRVDRMEHSIGSIVSKIDAVIVKLEIMERAKLKRREVLGRLLDGVAEDARLGRDSEIHREQMERLVREE LERWESDDAASQTGHGVSTQVGLGGQPHPRNPRPPSSQSAEGLEGGGGNGSANVHA

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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