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Report for CCDS19429.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19429.1 Public Mus musculus 5 Sdad1 23 108 98 CCDS HistoryNCBI Gene:231452Re-query CCDS DB by CCDS ID:19429.1Re-query CCDS DB by GeneID:231452See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 19429.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031364.4 ENSMUSP00000031364.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031364.4Link to Ensembl Protein Viewer:ENSMUSP00000031364.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000031364Re-query CCDS DB by Protein ID:ENSMUSP00000031364
Original member Current member NCBI NM_172713.2 NP_766301.1 Accepted alive Link to Nucleotide Sequence:NM_172713.2Link to Protein Sequence:NP_766301.1Re-query CCDS DB by Nucleotide ID:NM_172713Re-query CCDS DB by Protein ID:NP_766301Link to BLAST:NP_766301.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766301.1 687 Q80UZ2-1 687 99.4178% 0 4

Chromosomal Locations for CCDS 19429.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 92286823 92286870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92288467 92288628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92289740 92289824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92289921 92290111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92290258 92290352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92291013 92291139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92291707 92291783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92291886 92291983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92292653 92292729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92293963 92294021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92296011 92296068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92297120 92297223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92298192 92298261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92300062 92300163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92301812 92301886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92302639 92302696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92303666 92303766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92303884 92303955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92304973 92305083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92305204 92305302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92305733 92305837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92309792 92309881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2064 nt):
ATGTCCGGCAGGAACAACAACAAGCTGCCCAGCAACCTGCCGCAGTTACAGAACCTGATCAAGCGGGACC
CGCCGGCCTACGTGGAGGAGTTCCTTCAGCAATATAACCACTATAAATCCAATATGGAGATTTTCAAGTT
ACAACCAAATAAGCCCAGCAAAGAGCTGGCAGAGCTGGTGATGTTCATGGCGCAGATTGGCCAGTGCTAC
CCGGAGCATCTCAGTAACTTCCCGCAGGAGCTGAAGGACCTGCTCTCCTACAACCACACTGTCTTAGACC
CAGATCTCCGCATGACGTTTTGCAAAGCCTTGATCTTACTGAGAAACAAGAATCTCATCAATCCATCAAG
TTTGCTAGAGCTCTTCTTTGAGCTGCTGCGCTGCCACGACAAGCTCCTGCGGAAGACTCTGTACACACAC
ATTGTGACTGACATCAAGAACATCAACGCCAAACACAAGAACAACAAAGTGAACGTGGTGCTGCAGAACT
TCATGTACACCATGTTGAGAGACAGCAATGCAACCGCAGCCAAGATGTCCTTGGATGTGATGATCGAACT
CTACAGAAGGAACATCTGGAATGATGCCAAAACTGTCAATGTTATCACAACTGCGTGTTTCTCCAAGATC
ACCAAGATATTGGTTGCTGCTTTGACGTTCTTCCTTGGGAAAGATGAGGAAGAGAAGCAGGACAGTGACT
CAGAATCCGAGGAGGATGGGCCCACAGCGAGAGACCTGCTGGTGCAGTATGCCACGGGAAAGAAAGGCTC
CAAAAACAAGAAGAAGCTGGAAAAGGCGATGAAAGTGCTGAAGAAGCAAAAGAAGAAGAAGAAACCAGAA
GTGTTTAACTTTTCAGCTATTCACTTGATTCATGATCCCCAAGACTTCGCAGAGAAGCTTCTGAAGCAGC
TGGAGAGCTGTAAGGAGCGGTTTGAGGTGAAGATGATGCTCATGAACCTCATCTCCAGATTGGTGGGCAT
TCACGAGCTTTTCCTCTTCAACTTCTACCCTTTTGTGCAAAGGTTTCTGCAGCCCCACCAGAGAGAAGTC
ACGAAGATCCTTCTGTTTGCTGCACAAGCCTCTCATCACCTGGTGCCCCCAGAGATTATTCAGTCGTTGC
TTGTGACGGTGGCCAACAATTTTGTTACTGACAAGAACTCTGGGGAAGTCATGACCGTAGGGATCAATGC
TATAAAAGAGATCACAGCTCGATGTCCTCTGGCCATGACTGAAGAGCTTCTCCAGGACCTGGCTCAGTAT
AAGACACACAAAGATAAGAATGTGATGATGTCTGCCAGGACTTTGATCCATCTCTTCCGGACATTGAACC
CTCAGATGCTGCAGAAGAAGTTCCGGGGTAAACCCACTGAAGCCTCCATCGAAGCAAGAATACAAGAATA
TGGAGAATTAGATGCTAAAGATTACATCCCAGGAGCAGAGGTTCTAGAGCTTGAGAAGGGAGATAATACA
GAAGATGATGAAGATGGATGGGAAAGCGCCAGCCTCAGTGAGGAGGAGGAAGAGGATGGTGAGTGGGTTG
ACGTGCACCACTCTTCTGATGAGGAGCAGCAAGCAATTGCCACGAAGCTGGACAGCATGCCCATGGAGGA
GCGGAAAGCCAAGGCTGCAGCCATCAGCACCAGTCGAGTTTTAACGCAGGATGACTTCCAGAAAATCCGC
ATGGCCCAGATGAAGAAGGAAATGGATGCTGCTCCGGGGAAAGCCCAGAAAAGGAAATACTTAGAAATTG
ACAGTGACGAGGAGTCCAGGGGTGAATTGCTGTCTCTTCGGGACATTGAACGCCTTCATAAAAAGCCCAA
GTCTGACAAGGAAACGAGACTAGCAACTGCAATGGCTGGAAGGACAGACCGAAAGGAGTTTGTGAGGAAG
AAAACCAAAATAAACCCATTTTCCAGTTCCACAAACAAAGAGAAGAAAAAGCAGAAGAACTTTATGATGA
TGCGGTATAGCCAGAATGTCCGGTCAAAAACAGCACGGTCCTTCCGGGAGAAGCAGCTAGCACTACGAGA
TGCACTTCTGAAAAAGAGGAAAAGAATGAAGTAA

Translation (687 aa):
MSGRNNNKLPSNLPQLQNLIKRDPPAYVEEFLQQYNHYKSNMEIFKLQPNKPSKELAELVMFMAQIGQCY
PEHLSNFPQELKDLLSYNHTVLDPDLRMTFCKALILLRNKNLINPSSLLELFFELLRCHDKLLRKTLYTH
IVTDIKNINAKHKNNKVNVVLQNFMYTMLRDSNATAAKMSLDVMIELYRRNIWNDAKTVNVITTACFSKI
TKILVAALTFFLGKDEEEKQDSDSESEEDGPTARDLLVQYATGKKGSKNKKKLEKAMKVLKKQKKKKKPE
VFNFSAIHLIHDPQDFAEKLLKQLESCKERFEVKMMLMNLISRLVGIHELFLFNFYPFVQRFLQPHQREV
TKILLFAAQASHHLVPPEIIQSLLVTVANNFVTDKNSGEVMTVGINAIKEITARCPLAMTEELLQDLAQY
KTHKDKNVMMSARTLIHLFRTLNPQMLQKKFRGKPTEASIEARIQEYGELDAKDYIPGAEVLELEKGDNT
EDDEDGWESASLSEEEEEDGEWVDVHHSSDEEQQAIATKLDSMPMEERKAKAAAISTSRVLTQDDFQKIR
MAQMKKEMDAAPGKAQKRKYLEIDSDEESRGELLSLRDIERLHKKPKSDKETRLATAMAGRTDRKEFVRK
KTKINPFSSSTNKEKKKQKNFMMMRYSQNVRSKTARSFREKQLALRDALLKKRKRMK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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