NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19379.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19379.1 Public Mus musculus 5 Gnrhr 23 108 98 CCDS HistoryNCBI Gene:14715Re-query CCDS DB by CCDS ID:19379.1Re-query CCDS DB by GeneID:14715See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19379.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031172.8 ENSMUSP00000031172.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031172.8Link to Ensembl Protein Viewer:ENSMUSP00000031172.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000031172Re-query CCDS DB by Protein ID:ENSMUSP00000031172
Original member Current member NCBI NM_010323.2 NP_034453.1 Accepted alive Link to Nucleotide Sequence:NM_010323.2Link to Protein Sequence:NP_034453.1Re-query CCDS DB by Nucleotide ID:NM_010323Re-query CCDS DB by Protein ID:NP_034453Link to BLAST:NP_034453.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034453.1 327 Q01776 327 100% 0 0

Chromosomal Locations for CCDS 19379.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 86182176 86182420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86185271 86185487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86197304 86197825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (984 nt):
ATGGCTAACAATGCATCTCTTGAGCAGGACCCAAATCACTGCTCGGCCATCAACAACAGCATCCCCTTGA
TACAGGGCAAGCTCCCGACTCTAACCGTATCTGGAAAGATCCGAGTGACCGTGACTTTCTTCCTTTTCCT
ACTCTCTACTGCCTTCAATGCTTCCTTCTTGTTGAAGCTGCAGAAGTGGACTCAGAAGAGGAAGAAAGGA
AAAAAGCTCTCAAGGATGAAGGTGCTTTTAAAGCATTTGACCTTAGCCAACCTGCTGGAGACTCTGATCG
TCATGCCACTGGATGGGATGTGGAATATTACTGTTCAGTGGTATGCTGGGGAGTTCCTCTGCAAAGTTCT
CAGCTATCTGAAGCTCTTCTCTATGTATGCCCCAGCTTTCATGATGGTGGTGATTAGCCTGGACCGCTCC
CTGGCCATCACTCAGCCCCTTGCTGTACAAAGCAACAGCAAGCTTGAACAGTCTATGATCAGCCTGGCCT
GGATTCTCAGCATTGTCTTTGCAGGACCACAGTTATATATCTTCAGGATGATCTACCTAGCAGACGGCTC
TGGGCCCACAGTCTTCTCGCAATGTGTGACCCACTGCAGCTTTCCACAGTGGTGGCATCAGGCCTTCTAC
AACTTTTTCACCTTCGGCTGCCTCTTCATCATCCCCCTCCTCATCATGCTAATCTGCAATGCCAAAATCA
TCTTTGCTCTCACGCGAGTCCTTCATCAAGACCCACGCAAACTACAGCTGAATCAGTCCAAGAATAATAT
CCCAAGAGCTCGGCTGAGAACGCTAAAGATGACAGTCGCATTCGCTACCTCCTTTGTCGTCTGCTGGACT
CCCTACTATGTCCTAGGCATTTGGTACTGGTTTGATCCAGAAATGTTGAACAGGGTGTCAGAGCCAGTGA
ATCACTTTTTCTTTCTCTTTGCTTTCCTAAACCCGTGCTTCGACCCACTCATATATGGGTATTTCTCTTT
GTAG

Translation (327 aa):
MANNASLEQDPNHCSAINNSIPLIQGKLPTLTVSGKIRVTVTFFLFLLSTAFNASFLLKLQKWTQKRKKG
KKLSRMKVLLKHLTLANLLETLIVMPLDGMWNITVQWYAGEFLCKVLSYLKLFSMYAPAFMMVVISLDRS
LAITQPLAVQSNSKLEQSMISLAWILSIVFAGPQLYIFRMIYLADGSGPTVFSQCVTHCSFPQWWHQAFY
NFFTFGCLFIIPLLIMLICNAKIIFALTRVLHQDPRKLQLNQSKNNIPRARLRTLKMTVAFATSFVVCWT
PYYVLGIWYWFDPEMLNRVSEPVNHFFFLFAFLNPCFDPLIYGYFSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH