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Report for CCDS19343.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19343.1 Public Mus musculus 5 Lrrc66 23 108 98 CCDS HistoryNCBI Gene:231296Re-query CCDS DB by CCDS ID:19343.1Re-query CCDS DB by GeneID:231296See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19343.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087177.3 ENSMUSP00000084423.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087177.3Link to Ensembl Protein Viewer:ENSMUSP00000084423.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000087177Re-query CCDS DB by Protein ID:ENSMUSP00000084423
Original member NCBI NM_153568.1 NP_705796.1 Updated not alive Link to Nucleotide Sequence:NM_153568.1Link to Protein Sequence:NP_705796.1Re-query CCDS DB by Nucleotide ID:NM_153568Re-query CCDS DB by Protein ID:NP_705796
Current member NCBI NM_153568.2 NP_705796.1 Accepted alive Link to Nucleotide Sequence:NM_153568.2Link to Protein Sequence:NP_705796.1Re-query CCDS DB by Nucleotide ID:NM_153568Re-query CCDS DB by Protein ID:NP_705796Link to BLAST:NP_705796.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705796.1 872 Q8K0B3 872 100% 0 0

Chromosomal Locations for CCDS 19343.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 73607080 73608863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73610762 73610951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73615479 73615648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73629531 73630005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2619 nt):
ATGAGAGACTTCTACGTCAGAGTTACTATCCTAGTTACAGGTCTTTGCTTTGTGGAAACAGTGACAACCC
CATCAAGAAAAAGCAGCGTTTCCTTCAATCCCGAGTACCAGAGGAATGGGGACCTTCTGGTAAACTGGTC
TTCTATAAGACACGTGTCACAGAACACAGACGCCATGGATAGAAGTTTCTACTTCTTTAGAGTTCTCTTC
CAGCCTCACACACAAAAAGAACGGCACATAAAACCTCCGGACCGCACTCACCATCGCATATCGAAAGTGA
CCCTCGACCCTCTGGCGCATTTACATGCTTTGGAGATACTAAACCTCAGCAACAAAGCTATCCACTACTT
CTCGCTGGATCAGCCCCTGCCTCCTTCCTCACACCAAAAGCGCCACGGAGGCCACTCCCACAGCCGGCTC
CCCAGGCTCCAGGTGCTGATCCTTCAAAGGAATCAACTCAGTGGTACTCCTAAAGGACTGTGGAAGCTGA
AGTCATTGCGGAGTCTGGATCTGTCATTCAACAGGATAGTTCACATTGGGCTGTCTGATTTTCATGGCTG
CCTGCAGCTGGAAAGCATCTATTTAAAGAGCAACAAGATCTGCACGATTCACCCCAAAGCCTTCAAAGGG
CTCAAAAAATTACAGGTGGTAGACCTCAGAAGCAATGCACTGACCACTCTGGTACCGATTGTGACCATTG
CTCTAGAATTGCCCCACCTGGAACTTGGCTTGGCTGATAACCAGTGGCAGTGTAGTGAAAGCAATGTCAA
CTTCCAAAACATTACCTCTTCATCCTGGAGGGAAATATGGAAAGCCATCTGCAACATGTCTGTGGAGAAC
AAGAGGCCAAATGCAGAGACTCACCAGATCAGAAAATCCAGGGATACACACCTTCTTCTGTCTCCTCCAA
GTGACTTGAAAAGCCTCATCCAGAGCAAGGCAGAGAGGCCCCAGGCAGGGATGGACATGCACCTTTCTGC
TCTGGGGAAGGAGGCGAAGGATGGCTATGGTGATCTCAGAGGGATGTGGCCACAGTCCCCAGTAGAACTC
AGAGATTCTCAGGATGAACAGGTCACTGACAGAAAGGATGACAAGCCCCCAGCCCTTGAGCTGGCCATCT
GCCTGTCGGTGTTCATCACGTTTGTGGTGGCTTTCTGCCTGGGGGCTTTTGCAAGGCCCTACATTGACAG
GCTACGGCAACAGAGATGCTCGAATAAAAGGCCCGGCTCAGATAATGCCTACTCAAACAAGGGCTTCCAT
GGCGACATTGAAGGTGCTCAACACATGGAGTACCAAGGGACAGATCTACACCAAACTACCCACCACCTAC
ATCTTTCTGAGAACCAGAACCCTTCGTGGGTGGCAGAGCCAATCCCACACAGTGCTGTCCAATCAGAACA
GATGCTGGGAAGCAACGGAACAGACCCCGGTCATCAGCAGAGCCCAGAGCAACTCAAGGACAGCAATGAA
TCAAGAAGTGGAGATAGCATCGTGCTTCCAAGTGGCCCTGTAGCCCATCTTGCGCTCCATGGCCTTCCAA
ACGCTGATGCACACAAGGCGATTTCACCAGTGCAGCATCACCATGATTTTCTTGAAGAAGCACATTATGA
CACAGTGGCCCAGGAATATTCTCTCATTGACGATGTGATGGACAGGTCTTCCATCACTGGCCCTCTGGGA
ACTTTCCCCAGCTCTGTCGAGAGTAGGCGGGATGACCTGCACCCATCACAGCCAAGAGATGTTGTGGCTT
CTTTCTCCAAAACTCTAGCACATGCAAACACTAGAGAGGCTGAGGGGAGTATGGAAACGGGGTGCCCTGA
ACCTTTGGGAGCCATGGACTCACAGATGGGATCTTCTGAGGAAAGGCAAGTGAGCAATTCCATTAGGGAA
CTGGCCACACAGCAGCCAAGCTTCCAGGGGGTTGATGCTGAGGAGAGACTTTCCCATGTCTACAGCGAGG
TCCTACACAATGACCCACCCTCTCTTAGGCCAAGATGGGGCAGTGGCCATTATGTCATCCCTGCTACTGG
GGAGCCTGTGGAGAGAGATGCTCCTTTTGACCCTCATTATGACTTGGTGACCAACTACGAGTCTGATTCC
GACGAGGGTTCTTTGTTTACCCTTAGTTCTGAGGGTTCTGAAGACACAAGGAGCTTGGCTGAGGAACAGG
CATCTGTGGAGAATGATGGGACCAGCCAGCCCCTCCCAAGCAGGAACTTGGGGGAATACAAGGACAGTGT
GACATCAGCAGAAAGTGTTGAGGACCTCACATCGCAAAGGATTCCAGAGAAATGTGAAGCGCAGGAAGCT
CACCTTAGAAACACTCTTATTTCTGGTCCAGACTCTTGTGTGTGTGAGACAAATCAGGAAAATGACTCTA
GCTCCCTTGACCCTGAGAATAGATCAACGTGGCCCCAACTCCCAGGACATAAGTTATCACATCATGAGAC
TCTGGGCACATATGGTGACATAGAACCCCAGTCTGAGGCAGTAGACTGGCACTACTCCCTTAGAGACCTG
GAATCCCCAAATGTAGATAGTTCACCATCACCACCATATTCTGATGAAGATCTCTCAGGTCCTGAGGATC
GTGCCCGCAAGAGAAGTAAGCATTGGTAA

Translation (872 aa):
MRDFYVRVTILVTGLCFVETVTTPSRKSSVSFNPEYQRNGDLLVNWSSIRHVSQNTDAMDRSFYFFRVLF
QPHTQKERHIKPPDRTHHRISKVTLDPLAHLHALEILNLSNKAIHYFSLDQPLPPSSHQKRHGGHSHSRL
PRLQVLILQRNQLSGTPKGLWKLKSLRSLDLSFNRIVHIGLSDFHGCLQLESIYLKSNKICTIHPKAFKG
LKKLQVVDLRSNALTTLVPIVTIALELPHLELGLADNQWQCSESNVNFQNITSSSWREIWKAICNMSVEN
KRPNAETHQIRKSRDTHLLLSPPSDLKSLIQSKAERPQAGMDMHLSALGKEAKDGYGDLRGMWPQSPVEL
RDSQDEQVTDRKDDKPPALELAICLSVFITFVVAFCLGAFARPYIDRLRQQRCSNKRPGSDNAYSNKGFH
GDIEGAQHMEYQGTDLHQTTHHLHLSENQNPSWVAEPIPHSAVQSEQMLGSNGTDPGHQQSPEQLKDSNE
SRSGDSIVLPSGPVAHLALHGLPNADAHKAISPVQHHHDFLEEAHYDTVAQEYSLIDDVMDRSSITGPLG
TFPSSVESRRDDLHPSQPRDVVASFSKTLAHANTREAEGSMETGCPEPLGAMDSQMGSSEERQVSNSIRE
LATQQPSFQGVDAEERLSHVYSEVLHNDPPSLRPRWGSGHYVIPATGEPVERDAPFDPHYDLVTNYESDS
DEGSLFTLSSEGSEDTRSLAEEQASVENDGTSQPLPSRNLGEYKDSVTSAESVEDLTSQRIPEKCEAQEA
HLRNTLISGPDSCVCETNQENDSSSLDPENRSTWPQLPGHKLSHHETLGTYGDIEPQSEAVDWHYSLRDL
ESPNVDSSPSPPYSDEDLSGPEDRARKRSKHW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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