NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19331.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19331.1 Public Mus musculus 5 Zar1 23 108 98 CCDS HistoryNCBI Gene:317755Re-query CCDS DB by CCDS ID:19331.1Re-query CCDS DB by GeneID:317755See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19331.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073528.3 ENSMUSP00000073221.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073528.3Link to Ensembl Protein Viewer:ENSMUSP00000073221.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000073528Re-query CCDS DB by Protein ID:ENSMUSP00000073221
Original member Current member NCBI NM_174877.3 NP_777366.1 Accepted alive Link to Nucleotide Sequence:NM_174877.3Link to Protein Sequence:NP_777366.1Re-query CCDS DB by Nucleotide ID:NM_174877Re-query CCDS DB by Protein ID:NP_777366Link to BLAST:NP_777366.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_777366.1 361 Q80SU3 361 100% 0 0

Chromosomal Locations for CCDS 19331.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 72577260 72577403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72578272 72578346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72578426 72578518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72580284 72581057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1086 nt):
ATGTTCCCGGCGAGCACGTTCCACCCCTGCCCGCATCCTTATCCGCAGGCCACCAAAGCCGGGGATGGCT
GGAGGTTCGGAGCCAGGGGCTGCCGACCCGCGCCCCCCTCCTTCCTCCCCGGCTACAGACAGCTCATGGC
CGCGGAGTACGTCGACAGCCACCAGCGGGCACAGCTCATGGCCCTGCTGTCGCGGATGGGTCCCCGGTCG
GTCAGCAGCCGTGACGCTGCGGTGCAGGTGAACCCGCGCCGCGACGCCTCGGTGCAGTGTTCACTCGGGC
GCCGCACGCTGCAGCCTGCAGGGTGCCGAGCCAGCCCCGACGCCCGATCGGGTTCCTGTCAACCCCGTGG
CCACGCCGGCGCCGGGAGATCCCCGCGATCCTGGCAGACCGTAGCCCCGTTCTCGTCCGTGACCTTCTGT
GGCCTCTCCTCCTCACTGGAGGTTGCGGGAGGCAGGCAGACACCCACGAAGGGAGAGGGGAGCCCGGCAT
CCTCGGGGACCCGGGAACCGGAGCCGAGAGAGGTGGCCGCGAGGAAAGCGGTCCCCCAGCCGCGAAGCGA
GGAGGGCGATGTTCAGGCTGCAGGGCAGGCCGGGTGGGAGCAGCAGCCACCACCGGAGGACCGGAACAGT
GTGGCGGCGATGCAGTCTGAGCCTGGGAGCGAGGAGCCATGTCCTGCCGCAGAGATGGCTCAGGACCCCG
GTGATTCGGATGCCCCTCGAGACCAGGCCTCCCCGCAAAGCACGGAGCAGGACAAGGAGCGCCTGCGTTT
CCAGTTCTTAGAGCAGAAGTACGGCTACTATCACTGCAAGGACTGCAAAATCCGGTGGGAGAGCGCCTAT
GTGTGGTGTGTGCAGGGCACCAGTAAGGTGTACTTCAAACAGTTCTGCCGAGTGTGTGAGAAATCCTACA
ACCCTTACAGAGTGGAGGACATCACCTGTCAAAGTTGTAAAAGAACTAGATGTGCCTGCCCAGTCAGACT
TCGCCACGTGGACCCTAAACGCCCCCATCGGCAAGACTTGTGTGGGAGATGCAAGGACAAACGCCTGTCC
TGCGACAGCACCTTCAGCTTCAAATACATCATTTAG

Translation (361 aa):
MFPASTFHPCPHPYPQATKAGDGWRFGARGCRPAPPSFLPGYRQLMAAEYVDSHQRAQLMALLSRMGPRS
VSSRDAAVQVNPRRDASVQCSLGRRTLQPAGCRASPDARSGSCQPRGHAGAGRSPRSWQTVAPFSSVTFC
GLSSSLEVAGGRQTPTKGEGSPASSGTREPEPREVAARKAVPQPRSEEGDVQAAGQAGWEQQPPPEDRNS
VAAMQSEPGSEEPCPAAEMAQDPGDSDAPRDQASPQSTEQDKERLRFQFLEQKYGYYHCKDCKIRWESAY
VWCVQGTSKVYFKQFCRVCEKSYNPYRVEDITCQSCKRTRCACPVRLRHVDPKRPHRQDLCGRCKDKRLS
CDSTFSFKYII


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH