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Report for CCDS19301.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19301.1 Public Mus musculus 5 Klf3 23 108 98 CCDS HistoryNCBI Gene:16599Re-query CCDS DB by CCDS ID:19301.1Re-query CCDS DB by GeneID:16599See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19301.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000166409.5 ENSMUSP00000128429.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166409.5Link to Ensembl Protein Viewer:ENSMUSP00000128429.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166409Re-query CCDS DB by Protein ID:ENSMUSP00000128429
Original member Current member EBI ENSMUST00000165536.7 ENSMUSP00000129363.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165536.7Link to Ensembl Protein Viewer:ENSMUSP00000129363.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165536Re-query CCDS DB by Protein ID:ENSMUSP00000129363
Original member NCBI NM_008453.5 NP_032479.1 Updated not alive Link to Nucleotide Sequence:NM_008453.5Link to Protein Sequence:NP_032479.1Re-query CCDS DB by Nucleotide ID:NM_008453Re-query CCDS DB by Protein ID:NP_032479
Current member NCBI NM_008453.6 NP_032479.1 Accepted alive Link to Nucleotide Sequence:NM_008453.6Link to Protein Sequence:NP_032479.1Re-query CCDS DB by Nucleotide ID:NM_008453Re-query CCDS DB by Protein ID:NP_032479Link to BLAST:NP_032479.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032479.1 344 Q60980 344 100% 0 0

Chromosomal Locations for CCDS 19301.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 64816774 64816830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64821874 64822357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64822879 64823029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64827110 64827270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64828977 64829158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1035 nt):
ATGCTCATGTTTGATCCAGTCCCTGTCAAGCAGGAGGCCATGGACCCTGTCTCGGTGTCCTTCCCGTCGA
AT
TACATAGAATCGATGAAGCCCAACAAATATGGGGTCATTTACTCCACACCGTTGCCTGATAAGTTCTT
C
CAGACCCCAGAAGGCCTCACTCACGGGATACAGGTGGAGCCGGTGGACCTCACGGTGAACAAGCGGGGC
TCC
CCGCCTGCTGCGGGCGGTTCTCCTTCCTCTCTGAAGTTCCCGTCCCACCGGAGAGCGTCACCTGGCC
TC
AGCATGCCCTCCTCCAGTCCGCCCATTAAGAAGTACTCGCCCCCTTCTCCTGGCGTGCAGCCCTTTGG
A
GTACCCCTGTCTATGCCGCCTGTGATGGCAGCCGCGCTGTCCAGACACGGAATCCGGAGCCCAGGCATC
CTC
CCCGTCATTCAGCCCGTCGTGGTCCAGCCCGTTCCTTTTATGTATACCAGCCACCTGCAGCAGCCTC
TC
ATGGTTTCCTTGTCGGAAGAGATGGACAATTCAAACAGCGGCATGCCAGTACCTGTAATTGAATCATA
T
GAGAAGCCCTTATTACAGAAAAAAATTAAAATAGAGCCTGGAATTGAACCACAGAGGACTGACTATTAC
CCT
GAAGAAATGTCACCCCCTTTAATGAACCCAGTGTCCCCCCCGCAAGCCTTGTTGCAAGAGAACCATC
CT
TCCGTCATCGTGCAGCCTGGGAAGAGACCTCTACCTGTGGAATCCCCGGATACCCAAAGGAAGCGCAG
G
ATACACAGATGCGACTATGATGGGTGCAATAAGGTCTACACTAAGAGCTCGCACTTGAAAGCACACAGA
AGA
ACTCATACAGGAGAAAAGCCGTACAAATGCACCTGGGAAGGCTGCACGTGGAAGTTCGCTCGGTCTG
AT
GAACTGACGAGACATTTCCGAAAACACACTGGGATCAAACCTTTCCAGTGTCCAGACTGTGACCGAAG
C
TTCTCTCGCTCTGACCACCTTGCCCTACACAGGAAACGCCACATGCTAGTCTGA


Translation (344 aa):
MLMFDPVPVKQEAMDPVSVSFPSNYIESMKPNKYGVIYSTPLPDKFFQTPEGLTHGIQVEPVDLTVNKRG
S
PPAAGGSPSSLKFPSHRRASPGLSMPSSSPPIKKYSPPSPGVQPFGVPLSMPPVMAAALSRHGIRSPGI
L
PVIQPVVVQPVPFMYTSHLQQPLMVSLSEEMDNSNSGMP
VPVIESYEKPLLQKKIKIEPGIEPQRTDYY
P
EEMSPPLMNPVSPPQALLQ
ENHPSVIVQPGKRPLPVESPDTQRKRRIHRCDYDGCNKVYTKSSHLKAHR
R
THT
GEKPYKCTWEGCTWKFARSDELTRHFRKHTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV



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 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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