NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19215.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19215.1 Public Mus musculus 5 Sh3bp2 23 108 98 CCDS HistoryNCBI Gene:24055Re-query CCDS DB by CCDS ID:19215.1Re-query CCDS DB by GeneID:24055See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19215.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067638.13 ENSMUSP00000070890.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067638.13Link to Ensembl Protein Viewer:ENSMUSP00000070890.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000067638Re-query CCDS DB by Protein ID:ENSMUSP00000070890
Original member Current member EBI ENSMUST00000179943.2 ENSMUSP00000136671.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179943.2Link to Ensembl Protein Viewer:ENSMUSP00000136671.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179943Re-query CCDS DB by Protein ID:ENSMUSP00000136671
Original member Current member NCBI NM_011893.3 NP_036023.3 Accepted alive Link to Nucleotide Sequence:NM_011893.3Link to Protein Sequence:NP_036023.3Re-query CCDS DB by Nucleotide ID:NM_011893Re-query CCDS DB by Protein ID:NP_036023Link to BLAST:NP_036023.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036023.3 559 Q06649 559 99.6422% 0 2

Chromosomal Locations for CCDS 19215.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 34551565 34551700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34552737 34552839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34555457 34555574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34555942 34556012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34556891 34556979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34557295 34557363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34559001 34559649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34560344 34560452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34560689 34560744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34561026 34561107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34561603 34561662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34562359 34562496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1680 nt):
ATGGCGGCTGAGGAGATGCAGTGGCCTGTCCCCATGAAGGCCATTGGTGCCCAGAATTTGCTGACCATGC
CTGGTGGTGTGGCGAAGGCTGGTTACCTGCATAAGAAGGGTGGCACCCAACTGCAGCTGCTCAAATGGCC
CCTCCGCTTTGTGATCATCCACAAGCGCTGCATCTACTACTTCAAGAGCAGCACATCTGCCTCCCCACAG
GGTGCCTTCTCACTGAGTGGCTACAACAGAGTGATGCGAGCAGCTGAGGAGACCACGTCCAACAATGTCT
TCCCATTCAAGATCATTCACATCAGCAAGAAGCACCGAACATGGTTCTTCTCAGCGTCCTCTGAGGATGA
GCGCAAGAGCTGGATGGCCTTGCTACGCAGGGAAATTGGCCACTTCCATGAGAAGAAGGAACTACCTCTA
GACACCAGCGACTCTAGCTCAGACACGGACAGCTTCTATGGTGCAGTTGAGCGACCTATAGATATCAGCC
TGTCTTCATATCCCATGGACAATGAAGATTACGAACATGAAGATGAGGACGACTCGTACCTGGAGCCTGA
TTCCCCGGGGCCCATGAAGCTTGAAGATGCCCTGACCTATCCACCAGCCTACCCACCACCCCCTGTGCCT
GTACCTCGGAAGCCAGCCTTCTCTGACTTGCCCCGTGCCCACTCGTTCACCTCTAAAAGTCCAAGTCCCT
TACTGCCACCCCCACCTCCTAAGCGAGGCCTTCCAGACACTGGCTCTGCCCCTGAGGATGCTAAGGACGC
ATTGGGCCTGAGGCGAGTAGAGCCTGGCCTCAGGGTGCCTGCCACCCCTCGGAGGATGAGTGACCCCCCA
ATGAGCAATGTACCCACCGTGCCCAACCTCCGGAAACATCCTTGCTTCCGGGACAGTGTGAATCCCGGCC
TAGAACCCTGGACCCCTGGCCATGGGACTAGCTCTGTCTCCAGCTCTACCACCATGGCCGTTGCCACCTC
TAGGAACTGTGACAAACTCAAGTCATTCCACCTGTCTTCCCGAGGGCCACCCACATCTGAGCCCCCACCC
GTGCCTGCTAATAAGCCCAAGTTCCTGAAGATAGCTGAAGAACCTTCCCCGAGGGAGGCAGCCAAGTTTG
CACCTGTGCCCCCTGTGGCCCCCAGGCCTCCTGTGCAGAAGATGCCCATGCCTGAGGCTACTGTTCGGCC
TGCAGTGCTGCCTAGACCAGAGAACACACCTCTTCCTCACCTCCAGCGATCCCCCCCTGATGGACAGAGT
TTCAGGGGCTTCTCCTTTGAAAAGGCCCGCCAGCCCTCACAGGCTGACACTGGCGAGGAGGACTCAGATG
AAGACTATGAGAAGGTGCCGCTGCCTAACTCGGTGTTTGTCAACACGACAGAGTCCTGCGAGGTGGAAAG
GTTGTTCAAAGCTACGGACCCCCGTGGAGAGCCTCAGGATGGGCTGTATTGCATTCGGAACTCCTCTACC
AAGTCAGGGAAGGTTTTGGTCGTGTGGGATGAATCTTCTAACAAAGTGAGGAATTATCGCATCTTTGAAA
AGGATTCTAAGTTCTACCTGGAAGGTGAGGTTCTGTTTGCCAGTGTGGGCAGCATGGTGGAGCACTACCA
CACCCATGTGCTGCCCAGCCATCAGAGCCTGTTGCTGCGGCACCCATACGGCTACGCTGGGCCCAGGTGA

Translation (559 aa):
MAAEEMQWPVPMKAIGAQNLLTMPGGVAKAGYLHKKGGTQLQLLKWPLRFVIIHKRCIYYFKSSTSASPQ
GAFSLSGYNRVMRAAEETTSNNVFPFKIIHISKKHRTWFFSASSEDERKSWMALLRREIGHFHEKKELPL
DTSDSSSDTDSFYGAVERPIDISLSSYPMDNEDYEHEDEDDSYLEPDSPGPMKLEDALTYPPAYPPPPVP
VPRKPAFSDLPRAHSFTSKSPSPLLPPPPPKRGLPDTGSAPEDAKDALGLRRVEPGLRVPATPRRMSDPP
MSNVPTVPNLRKHPCFRDSVNPGLEPWTPGHGTSSVSSSTTMAVATSRNCDKLKSFHLSSRGPPTSEPPP
VPANKPKFLKIAEEPSPREAAKFAPVPPVAPRPPVQKMPMPEATVRPAVLPRPENTPLPHLQRSPPDGQS
FRGFSFEKARQPSQADTGEEDSDEDYEKVPLPNSVFVNTTESCEVERLFKATDPRGEPQDGLYCIRNSST
KSGKVLVVWDESSNKVRNYRIFEKDSKFYLEGEVLFASVGSMVEHYHTHVLPSHQSLLLRHPYGYAGPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH