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Report for CCDS19193.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19193.1 Public Mus musculus 5 Ppp1cb 23 108 98 CCDS HistoryNCBI Gene:19046Re-query CCDS DB by CCDS ID:19193.1Re-query CCDS DB by GeneID:19046See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19193.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000015100.14 ENSMUSP00000015100.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000015100.14Link to Ensembl Protein Viewer:ENSMUSP00000015100.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000015100Re-query CCDS DB by Protein ID:ENSMUSP00000015100
Original member Current member EBI ENSMUST00000201360.3 ENSMUSP00000144047.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000201360.3Link to Ensembl Protein Viewer:ENSMUSP00000144047.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000201360Re-query CCDS DB by Protein ID:ENSMUSP00000144047
Original member Current member NCBI NM_172707.3 NP_766295.2 Accepted alive Link to Nucleotide Sequence:NM_172707.3Link to Protein Sequence:NP_766295.2Re-query CCDS DB by Nucleotide ID:NM_172707Re-query CCDS DB by Protein ID:NP_766295Link to BLAST:NP_766295.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766295.2 327 P62141 327 100% 0 0

Chromosomal Locations for CCDS 19193.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 32459356 32459407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32478066 32478197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32480690 32480920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32483360 32483464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32485259 32485330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32485881 32486032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32487571 32487705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32490954 32491058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (984 nt):
ATGGCGGACGGGGAGCTGAACGTGGACAGCCTCATCACCCGCCTGCTGGAGGTACGAGGATGTCGTCCAG
GAAAGATTGTACAAATGACTGAAGCAGAAGTCCGAGGGTTGTGTATCAAGTCTCGTGAAATCTTTCTCAG
CCAGCCTATTCTTTTGGAATTGGAAGCACCACTGAAGATTTGTGGAGACATTCATGGACAATATACAGAC
TTACTAAGATTATTTGAATATGGAGGTTTTCCACCAGAAGCCAACTATCTTTTCTTAGGAGATTATGTGG
ACAGAGGAAAGCAGTCTTTGGAAACCATCTGTTTGCTATTGGCTTACAAAATCAAATACCCGGAGAACTT
CTTTCTTCTAAGAGGAAACCATGAGTGTGCTAGCATCAATCGCATTTATGGATTCTACGATGAGTGTAAA
CGAAGATTTAATATTAAATTGTGGAAGACATTCACTGATTGTTTTAACTGTCTGCCTATAGCTGCTATTG
TTGATGAGAAAATCTTCTGTTGTCATGGAGGACTGTCACCAGACCTACAATCTATGGAACAGATTCGGAG
AATTATGAGACCCACTGACGTACCTGATACAGGTTTGCTTTGTGACTTACTGTGGTCCGACCCAGATAAG
GATGTGCAAGGCTGGGGAGAAAATGACCGTGGTGTTTCTTTTACTTTTGGAGCTGATGTAGTCAGTAAAT
TTCTGAATCGTCATGATTTAGACTTGATTTGTCGAGCTCATCAGGTGGTGGAAGACGGATATGAATTTTT
TGCTAAACGACAGTTGGTAACCTTATTTTCTGCCCCAAATTACTGTGGCGAGTTTGACAATGCTGGTGGT
ATGATGAGTGTGGATGAGACTTTGATGTGTTCATTCCAGATATTGAAACCATCTGAAAAGAAAGCTAAGT
ACCAGTATGGTGGGCTGAATTCTGGACGTCCTGTCACTCCGCCTCGAACAGCTAATCCACCGAAGAAAAG
GTGA

Translation (327 aa):
MADGELNVDSLITRLLEVRGCRPGKIVQMTEAEVRGLCIKSREIFLSQPILLELEAPLKICGDIHGQYTD
LLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECK
RRFNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSMEQIRRIMRPTDVPDTGLLCDLLWSDPDK
DVQGWGENDRGVSFTFGADVVSKFLNRHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGG
MMSVDETLMCSFQILKPSEKKAKYQYGGLNSGRPVTPPRTANPPKKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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