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Report for CCDS19180.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19180.1 Public Mus musculus 5 Nrbp1 23 108 98 CCDS HistoryNCBI Gene:192292Re-query CCDS DB by CCDS ID:19180.1Re-query CCDS DB by GeneID:192292See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19180.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031034.11 ENSMUSP00000031034.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031034.11Link to Ensembl Protein Viewer:ENSMUSP00000031034.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000031034Re-query CCDS DB by Protein ID:ENSMUSP00000031034
Original member Current member NCBI NM_147201.2 NP_671734.1 Accepted alive Link to Nucleotide Sequence:NM_147201.2Link to Protein Sequence:NP_671734.1Re-query CCDS DB by Nucleotide ID:NM_147201Re-query CCDS DB by Protein ID:NP_671734Link to BLAST:NP_671734.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_671734.1 535 Q99J45 535 100% 0 0

Chromosomal Locations for CCDS 19180.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 31243782 31243991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31244166 31244288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31244458 31244559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31244877 31244966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31245363 31245403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31245751 31245845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31247342 31247425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31247684 31247742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31247898 31247996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31249549 31249681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31249889 31249994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31250090 31250140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31250230 31250365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31250544 31250597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31250681 31250744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31250892 31250947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31251025 31251129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1608 nt):
ATGTCGGAAGGGGAGTCCCAAACAGTAGTCAGCAGTGGCTCAGACCCAAAGGTAGAATCCTCATCTTTAG
CTCCTGGCCTGACTTCTGTGTCACCTCCTGTGACCTCTACAACTTCAGCTGCTTCTCCCGAGGAAGAAGA
AGAAAGTGAAGATGAGTCTGAGATCTTGGAAGAGTCACCCTGTGGGCGCTGGCAGAAGAGGCGAGAAGAG
GTGAATCAGCGTAATGTACCAGGCATTGACAGTGCATACCTGGCCATGGATACAGAGGAAGGTGTGGAGG
TTGTGTGGAATGAGGTACAGTTCTCTGAACGCAAGAACTACAAACTGCAGGAGGAAAAGGTCCGTGCAGT
GTTTGATAATCTGATTCAGCTGGAACATCTTAACATTGTTAAGTTTCACAAATATTGGGCTGATGTTAAA
GAGAACAAGGCTAGGGTGATTTTCATCACAGAATACATGTCCTCTGGGAGTCTTAAGCAGTTTCTGAAGA
AGACCAAAAAGAACCACAAGACTATGAATGAAAAGGCTTGGAAACGCTGGTGTACACAGATCCTCTCTGC
CCTAAGCTACCTGCACTCCTGTGACCCTCCCATCATCCATGGGAACCTGACCTGTGACACCATCTTCATC
CAGCACAACGGACTCATCAAGATTGGCTCTGTGGCTCCTGACACTATCAACAATCACGTGAAGACTTGCC
GGGAAGAACAGAAGAACCTACACTTTTTTGCACCAGAGTATGGAGAAGTCACAAACGTGACAACAGCAGT
GGACATCTACTCCTTTGGCATGTGTGCACTGGAGATGGCAGTGCTGGAGATTCAGGGCAATGGCGAGTCC
TCATATGTGCCACAGGAAGCCATCAGCAGTGCCATCCAGCTACTAGAAGACTCATTACAGAGGGAGTTTA
TTCAAAAGTGCCTGCAGTCTGAGCCTGCTCGGAGACCAACAGCCAGAGAACTTCTGTTCCACCCAGCACT
GTTTGAAGTGCCCTCACTCAAGCTTCTTGCTGCTCACTGTATCGTGGGGCACCAACACATGATCCCAGAG
AACGCTCTAGAGGAGATCACCAAGAACATGGATACCAGTGCTGTACTAGCTGAAATTCCCGCAGGGCCAG
GACGAGAACCAGTTCAGACTTTGTACTCTCAGTCACCAGCCCTAGAATTAGACAAATTCCTTGAAGATGT
CAGGAATGGGATCTACCCTCTGACAGCCTTTGGGCTACCTCGGCCTCAGCAGCCACAGCAGGAGGAGGTG
ACATCACCTGTTGTGCCCCCCTCTGTCAAGACTCCAACTCCTGAGCCAGCTGAAGTGGAGACACGAAAGG
TGGTGCTGATGCAGTGCAACATCGAATCTGTGGAGGAGGGAGTCAAACACCATCTAACACTTCTGCTGAA
GCTGGAGGACAAATTGAACCGGCACCTGAGCTGTGACCTGATGCCAAATGAGAGCATCCCGGACTTGGCA
GCTGAGCTGGTGCAGCTGGGCTTCATTAGTGAGGCTGATCAGAGCCGCCTGACTTCTCTGCTGGAGGAGA
CGCTCAACAAGTTCAACTTCACCAGGAACAGTACACTCAACACAGCCACTGTCACCGTCTCCTCGTAG

Translation (535 aa):
MSEGESQTVVSSGSDPKVESSSLAPGLTSVSPPVTSTTSAASPEEEEESEDESEILEESPCGRWQKRREE
VNQRNVPGIDSAYLAMDTEEGVEVVWNEVQFSERKNYKLQEEKVRAVFDNLIQLEHLNIVKFHKYWADVK
ENKARVIFITEYMSSGSLKQFLKKTKKNHKTMNEKAWKRWCTQILSALSYLHSCDPPIIHGNLTCDTIFI
QHNGLIKIGSVAPDTINNHVKTCREEQKNLHFFAPEYGEVTNVTTAVDIYSFGMCALEMAVLEIQGNGES
SYVPQEAISSAIQLLEDSLQREFIQKCLQSEPARRPTARELLFHPALFEVPSLKLLAAHCIVGHQHMIPE
NALEEITKNMDTSAVLAEIPAGPGREPVQTLYSQSPALELDKFLEDVRNGIYPLTAFGLPRPQQPQQEEV
TSPVVPPSVKTPTPEPAEVETRKVVLMQCNIESVEEGVKHHLTLLLKLEDKLNRHLSCDLMPNESIPDLA
AELVQLGFISEADQSRLTSLLEETLNKFNFTRNSTLNTATVTVSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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